View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17956_low_11 (Length: 418)

Name: NF17956_low_11
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17956_low_11
NF17956_low_11
[»] chr1 (23 HSPs)
chr1 (17-366)||(29644145-29644498)
chr1 (215-339)||(44890055-44890180)
chr1 (104-177)||(2404721-2404794)
chr1 (104-176)||(41059161-41059234)
chr1 (17-88)||(2793391-2793462)
chr1 (267-355)||(3927619-3927709)
chr1 (102-176)||(45961633-45961707)
chr1 (104-177)||(21019296-21019368)
chr1 (102-175)||(27537139-27537212)
chr1 (17-86)||(34733100-34733169)
chr1 (27-88)||(49499415-49499476)
chr1 (203-315)||(31068695-31068807)
chr1 (17-88)||(1951182-1951253)
chr1 (236-318)||(51799559-51799642)
chr1 (364-400)||(29644763-29644799)
chr1 (104-176)||(42021721-42021793)
chr1 (261-328)||(9483849-9483917)
chr1 (272-315)||(27364801-27364845)
chr1 (275-354)||(36099609-36099689)
chr1 (295-347)||(36192196-36192248)
chr1 (107-177)||(2793298-2793368)
chr1 (105-176)||(21108322-21108393)
chr1 (137-179)||(37640979-37641021)
[»] chr7 (27 HSPs)
chr7 (204-366)||(40681662-40681826)
chr7 (17-176)||(8276012-8276175)
chr7 (104-177)||(45288066-45288139)
chr7 (104-176)||(45291402-45291474)
chr7 (104-177)||(9273962-9274035)
chr7 (104-176)||(9865570-9865642)
chr7 (263-362)||(14316441-14316541)
chr7 (104-176)||(20081568-20081640)
chr7 (17-85)||(10431481-10431549)
chr7 (104-176)||(17729973-17730045)
chr7 (104-176)||(9080376-9080448)
chr7 (17-88)||(4542166-4542237)
chr7 (102-177)||(4596850-4596925)
chr7 (17-88)||(26556602-26556673)
chr7 (104-154)||(4694745-4694795)
chr7 (104-154)||(10344638-10344688)
chr7 (203-322)||(16559093-16559213)
chr7 (203-322)||(16606449-16606569)
chr7 (264-354)||(38153634-38153725)
chr7 (17-88)||(2442114-2442185)
chr7 (204-345)||(27853859-27854001)
chr7 (203-315)||(34236231-34236344)
chr7 (236-315)||(29375709-29375789)
chr7 (102-176)||(26556510-26556584)
chr7 (181-223)||(41805281-41805323)
chr7 (273-312)||(9095708-9095748)
chr7 (181-217)||(27218651-27218687)
[»] chr4 (55 HSPs)
chr4 (177-356)||(40434108-40434288)
chr4 (180-329)||(5633851-5634001)
chr4 (104-177)||(14571025-14571098)
chr4 (102-176)||(5680469-5680543)
chr4 (269-352)||(41458113-41458196)
chr4 (203-354)||(296266-296418)
chr4 (102-177)||(3718335-3718410)
chr4 (17-88)||(19865480-19865551)
chr4 (104-154)||(40794214-40794264)
chr4 (104-177)||(52007359-52007432)
chr4 (104-176)||(12782106-12782178)
chr4 (17-85)||(19861124-19861192)
chr4 (102-177)||(27013228-27013304)
chr4 (17-88)||(5721808-5721879)
chr4 (17-88)||(15431256-15431327)
chr4 (17-88)||(15437870-15437941)
chr4 (104-177)||(15430693-15430767)
chr4 (104-177)||(15437307-15437381)
chr4 (104-154)||(21419001-21419051)
chr4 (102-176)||(29323979-29324053)
chr4 (102-176)||(44809830-44809904)
chr4 (104-177)||(24044985-24045058)
chr4 (17-86)||(53093815-53093884)
chr4 (28-88)||(3798644-3798704)
chr4 (104-176)||(53010386-53010458)
chr4 (17-88)||(18910696-18910767)
chr4 (107-154)||(34320775-34320822)
chr4 (107-177)||(49269734-49269804)
chr4 (202-346)||(33100877-33101022)
chr4 (104-176)||(44164001-44164074)
chr4 (102-177)||(19826700-19826776)
chr4 (17-88)||(12237446-12237517)
chr4 (106-176)||(19819950-19820021)
chr4 (30-88)||(5669720-5669778)
chr4 (30-88)||(33410812-33410870)
chr4 (30-88)||(49269827-49269885)
chr4 (104-176)||(27677893-27677966)
chr4 (102-146)||(35509229-35509273)
chr4 (17-88)||(9717043-9717114)
chr4 (107-176)||(15431164-15431233)
chr4 (107-176)||(15437778-15437847)
chr4 (295-345)||(38655797-38655847)
chr4 (31-88)||(40617663-40617720)
chr4 (203-315)||(5760010-5760122)
chr4 (104-154)||(27691952-27692003)
chr4 (31-88)||(5680561-5680618)
chr4 (102-177)||(5669627-5669702)
chr4 (295-343)||(10008592-10008640)
chr4 (295-347)||(19837825-19837877)
chr4 (271-354)||(20509363-20509447)
chr4 (102-177)||(33410888-33410963)
chr4 (52-88)||(37104113-37104149)
chr4 (184-224)||(38296284-38296324)
chr4 (136-176)||(48636709-48636749)
chr4 (102-177)||(56198028-56198103)
[»] chr5 (34 HSPs)
chr5 (177-356)||(8249421-8249601)
chr5 (17-178)||(43490791-43490956)
chr5 (17-177)||(22937892-22938056)
chr5 (17-176)||(32837083-32837246)
chr5 (104-176)||(37214766-37214838)
chr5 (112-176)||(7270241-7270305)
chr5 (104-157)||(2836699-2836752)
chr5 (104-177)||(18031709-18031782)
chr5 (17-85)||(28442018-28442086)
chr5 (104-176)||(28788329-28788401)
chr5 (102-177)||(14016962-14017037)
chr5 (102-176)||(21336667-21336742)
chr5 (104-154)||(39191353-39191403)
chr5 (104-176)||(21827968-21828041)
chr5 (102-154)||(30065584-30065636)
chr5 (17-88)||(42061578-42061649)
chr5 (102-179)||(40916812-40916892)
chr5 (104-152)||(4100365-4100413)
chr5 (17-88)||(31862964-31863035)
chr5 (17-88)||(37214858-37214929)
chr5 (102-176)||(17747617-17747691)
chr5 (271-354)||(12832547-12832631)
chr5 (271-354)||(12864522-12864606)
chr5 (104-142)||(2837603-2837641)
chr5 (295-347)||(3580991-3581043)
chr5 (275-346)||(15772783-15772855)
chr5 (272-315)||(30723557-30723601)
chr5 (204-355)||(32018962-32019114)
chr5 (181-336)||(35637710-35637865)
chr5 (102-176)||(31862872-31862946)
chr5 (127-176)||(25329456-25329505)
chr5 (184-217)||(42039234-42039267)
chr5 (203-303)||(14921716-14921816)
chr5 (137-177)||(28563283-28563323)
[»] chr6 (25 HSPs)
chr6 (17-176)||(9953036-9953199)
chr6 (203-351)||(2540551-2540700)
chr6 (104-176)||(28666104-28666176)
chr6 (102-176)||(10289186-10289260)
chr6 (17-87)||(34501507-34501577)
chr6 (206-315)||(34600866-34600976)
chr6 (206-315)||(34627411-34627521)
chr6 (206-366)||(10304142-10304300)
chr6 (17-81)||(23379650-23379714)
chr6 (17-81)||(23388989-23389053)
chr6 (20-88)||(2371505-2371573)
chr6 (106-154)||(20181295-20181343)
chr6 (106-154)||(22154648-22154696)
chr6 (236-315)||(34722173-34722253)
chr6 (17-88)||(5739026-5739097)
chr6 (104-142)||(13004434-13004472)
chr6 (271-366)||(32197862-32197959)
chr6 (202-314)||(18016708-18016821)
chr6 (295-347)||(17712993-17713045)
chr6 (176-240)||(19154280-19154344)
chr6 (295-347)||(33753569-33753621)
chr6 (295-345)||(19616279-19616329)
chr6 (137-177)||(14968782-14968822)
chr6 (181-217)||(19350519-19350555)
chr6 (181-217)||(29976537-29976573)
[»] chr3 (37 HSPs)
chr3 (104-179)||(16185584-16185659)
chr3 (202-354)||(35502903-35503056)
chr3 (17-176)||(35411676-35411840)
chr3 (103-175)||(9380012-9380084)
chr3 (104-176)||(31548551-31548623)
chr3 (104-176)||(53814971-53815043)
chr3 (102-177)||(19302290-19302365)
chr3 (102-177)||(34984684-34984759)
chr3 (102-176)||(54460367-54460441)
chr3 (104-176)||(16243166-16243238)
chr3 (102-154)||(54736776-54736828)
chr3 (17-88)||(538107-538178)
chr3 (17-88)||(18645578-18645649)
chr3 (104-154)||(10880798-10880848)
chr3 (104-154)||(43808900-43808950)
chr3 (107-176)||(19305478-19305547)
chr3 (104-176)||(29344700-29344773)
chr3 (104-177)||(3839789-3839865)
chr3 (104-176)||(20729404-20729477)
chr3 (107-176)||(41976321-41976390)
chr3 (17-85)||(6921985-6922053)
chr3 (17-88)||(23299390-23299461)
chr3 (17-88)||(52198397-52198468)
chr3 (19-88)||(10884110-10884179)
chr3 (17-85)||(16185493-16185561)
chr3 (107-177)||(10884017-10884087)
chr3 (107-177)||(23299484-23299554)
chr3 (245-355)||(45967990-45968101)
chr3 (245-315)||(25844736-25844806)
chr3 (203-315)||(18689342-18689454)
chr3 (295-347)||(19652155-19652207)
chr3 (107-176)||(538015-538084)
chr3 (107-176)||(6921890-6921959)
chr3 (181-223)||(52250647-52250689)
chr3 (271-315)||(25132771-25132816)
chr3 (181-217)||(19875818-19875854)
chr3 (52-88)||(55032789-55032825)
[»] scaffold0005 (2 HSPs)
scaffold0005 (104-177)||(246278-246351)
scaffold0005 (19-88)||(291055-291124)
[»] scaffold0080 (1 HSPs)
scaffold0080 (17-176)||(26253-26408)
[»] scaffold0015 (1 HSPs)
scaffold0015 (104-176)||(197242-197314)
[»] chr8 (25 HSPs)
chr8 (17-176)||(14420864-14421027)
chr8 (104-177)||(5540923-5540996)
chr8 (17-176)||(45156755-45156918)
chr8 (106-177)||(5981150-5981221)
chr8 (260-354)||(460119-460214)
chr8 (104-154)||(12582240-12582290)
chr8 (102-176)||(18826760-18826834)
chr8 (110-176)||(25228016-25228080)
chr8 (203-354)||(16839268-16839420)
chr8 (17-81)||(25592336-25592400)
chr8 (17-81)||(25595521-25595585)
chr8 (17-88)||(5540832-5540903)
chr8 (22-81)||(18722151-18722210)
chr8 (17-88)||(43682634-43682705)
chr8 (27-88)||(10663103-10663164)
chr8 (31-88)||(33878089-33878146)
chr8 (113-176)||(19792926-19792990)
chr8 (104-142)||(30640541-30640579)
chr8 (112-179)||(10663008-10663075)
chr8 (17-88)||(25228106-25228175)
chr8 (181-217)||(12332423-12332459)
chr8 (295-347)||(17858153-17858205)
chr8 (102-142)||(22174817-22174857)
chr8 (137-177)||(22223291-22223331)
chr8 (137-177)||(22229633-22229673)
[»] scaffold0757 (1 HSPs)
scaffold0757 (104-176)||(4563-4635)
[»] chr2 (31 HSPs)
chr2 (107-176)||(25139971-25140040)
chr2 (104-176)||(5665830-5665902)
chr2 (104-176)||(10599951-10600023)
chr2 (104-176)||(43722904-43722976)
chr2 (17-88)||(25869927-25869998)
chr2 (17-88)||(36809272-36809343)
chr2 (102-176)||(38014636-38014710)
chr2 (104-177)||(3874481-3874554)
chr2 (104-177)||(13972741-13972814)
chr2 (104-176)||(5104953-5105023)
chr2 (102-154)||(31430564-31430616)
chr2 (17-88)||(25873295-25873366)
chr2 (17-88)||(26358764-26358835)
chr2 (17-88)||(38006123-38006194)
chr2 (245-346)||(21579667-21579769)
chr2 (102-179)||(16788386-16788462)
chr2 (104-176)||(6825974-6826046)
chr2 (17-88)||(25139877-25139948)
chr2 (104-154)||(13136784-13136834)
chr2 (27-88)||(30275538-30275599)
chr2 (17-81)||(25821754-25821818)
chr2 (102-177)||(25873202-25873277)
chr2 (271-315)||(20947116-20947161)
chr2 (18-85)||(16788483-16788550)
chr2 (102-176)||(25869835-25869909)
chr2 (181-223)||(26146790-26146832)
chr2 (181-223)||(43310834-43310876)
chr2 (137-177)||(11059029-11059069)
chr2 (272-315)||(12807581-12807625)
chr2 (52-88)||(15466262-15466298)
chr2 (202-254)||(40430010-40430062)
[»] scaffold1993 (1 HSPs)
scaffold1993 (104-176)||(1045-1117)
[»] scaffold0520 (1 HSPs)
scaffold0520 (104-177)||(4808-4881)
[»] scaffold0270 (3 HSPs)
scaffold0270 (104-177)||(988-1061)
scaffold0270 (104-152)||(4348-4396)
scaffold0270 (104-152)||(11478-11526)
[»] scaffold0381 (1 HSPs)
scaffold0381 (102-177)||(6479-6555)
[»] scaffold0233 (1 HSPs)
scaffold0233 (236-345)||(10948-11058)
[»] scaffold0035 (1 HSPs)
scaffold0035 (30-88)||(61689-61747)
[»] scaffold0225 (1 HSPs)
scaffold0225 (202-254)||(5576-5628)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 29644145 - 29644498
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttctannnnnnnnnnnnngtt----gcttaagc 112  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||              ||    |||||||     
T  29644145 tcatcctgtgctccaaatcgtgatacgttttcaacaatcgtgacacgattttactttcttcaaagtcttctatttttcttgctttttttgctgcttaagt 29644244  T
Q  113 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcacctccctcctcaccatatttcgcaaccaacacccta 212  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29644245 ttgcttgtgaactcaaaaatatcataaaaagactctataaatgtggaatgacagactgtcatcacctccctcctcaccatattttgcaaccaacacccta 29644344  T
Q  213 taccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcaccccaaaccaccaacctc 312  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29644345 taccacaaactctccttttcagtcaacaaccgccaacaccacattcttaataatgcactattaaactccctaattctcctcaccccaaaccaccaacctc 29644444  T
Q  313 ctttctcaaacaaacaggattccagtcaacccaagttattttttgtggtcgtca 366  Q
    ||||||||||||||||| |||||||||||||||| ||| |||||||||||||||    
T  29644445 ctttctcaaacaaacagaattccagtcaacccaaattaatttttgtggtcgtca 29644498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 215 - 339
Target Start/End: Original strand, 44890055 - 44890180
Alignment:
Q  215 ccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcaccc-caaaccaccaacctcc 313  Q
    ||||||||| ||||| |||||||||| ||||||||||||| | | |||||| |||||||||||||||||||||||||| |||| |||| ||| |||||||    
T  44890055 ccacaaactttccttctcagtcaacaaccgccaacaccacttccctaataaagcactattaaactccctaattctccttaccctcaaatcactaacctcc 44890154  T
Q  314 tttctcaaacaaacaggattccagtc 339  Q
    |||||||||||||||| |||||||||    
T  44890155 tttctcaaacaaacagaattccagtc 44890180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 2404794 - 2404721
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||   ||||||| ||||||||||||    
T  2404794 tgcttaatcttgcttgtgaactcaaaaatattataaaaagactctaaaaatagcgaatgactgactgtcatcac 2404721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 41059161 - 41059234
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||   ||||||| |||||||||||    
T  41059161 tgcttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 41059234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 2793462 - 2793391
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| || |||||||||| || ||||||||||||||||||| ||||| |||||||| ||||||||||    
T  2793462 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcgaaatcttcta 2793391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 355
Target Start/End: Original strand, 3927619 - 3927709
Alignment:
Q  267 gcactattaaactccctaattctcctca--ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttattttt 355  Q
    ||||||||||||||||||| ||||||    ||||||||||||||||||||||||||  ||||| | |||||| ||||||||||| ||||||    
T  3927619 gcactattaaactccctaaatctcctttacccccaaaccaccaacctcctttctcatgcaaaccgaattccaatcaacccaagtaattttt 3927709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 45961633 - 45961707
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||||    |||||| |||||||||||    
T  45961633 gttgtttaagcttgcttgtgaactcaaaattatcataacaagactctaaaaatagcaaatgactgactgtcatca 45961707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 21019296 - 21019368
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||||||||   ||||||| ||||||||||||    
T  21019296 tgcttaagcttggttgcgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatcac 21019368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 27537139 - 27537212
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatc 175  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| |||||||    |||||| ||||||||||    
T  27537139 gttgtttaagcttgcttgtgaactcaaaattatcataaaaagactataaaaatagcaaatgactgactgtcatc 27537212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 34733100 - 34733169
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttc 86  Q
    ||||||||| ||||||||| ||| |  ||||||||||||||| ||| |||||||||||||||||||||||    
T  34733100 tcatcctgtgctccaaatcctgacatgttttcaacaatcgtgtcacgattttactttcttcaaaatcttc 34733169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 49499415 - 49499476
Alignment:
Q  27 ctccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||||||| || ||||||||||||||||||  ||||| |||||||||||||||||||    
T  49499415 ctccaaatcgtgacacgttttcaacaatcgtgacatgattttgctttcttcaaaatcttcta 49499476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 31068807 - 31068695
Alignment:
Q  203 caacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcaccccaaac 302  Q
    |||||||||| |||| ||||||||| | ||   ||||| ||||||||||||| | | |||||| |||  ||||||||||||||| ||| | |||||||||    
T  31068807 caacaccctaaaccataaactctccctatccaccaacaaccgccaacaccacttccctaataaagcaaaattaaactccctaatactcattaccccaaac 31068708  T
Q  303 caccaacctcctt 315  Q
    ||| |||||||||    
T  31068707 cacgaacctcctt 31068695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 1951182 - 1951253
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||| | ||||||||||||| || ||||||||||||||||||| ||||| |||||||  ||||||||||    
T  1951182 tcatcctatgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttctttgaaatcttcta 1951253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 51799642 - 51799559
Alignment:
Q  236 caacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctca-ccccaaaccaccaacctcctttct 318  Q
    ||||| ||||||||||||| | |  ||||| |||||||||||||||||||  ||||| | ||||||||||||||||||||||||    
T  51799642 caacaaccgccaacaccacttccccaataaggcactattaaactccctaaaactccttacccccaaaccaccaacctcctttct 51799559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 29644763 - 29644799
Alignment:
Q  364 tcagagggtcccaaaaagacaaccgacacgcatcacc 400  Q
    |||||||||||||||||||||||||||||||||||||    
T  29644763 tcagagggtcccaaaaagacaaccgacacgcatcacc 29644799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 42021793 - 42021721
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||| ||||||||||||||||  ||||| |||||||||||||||||||   ||||||  |||||||||||    
T  42021793 tgcttaaacttgcttgtgaactcagtaatattataaaaagactctaaaaatagcgaatgattgactgtcatca 42021721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 328
Target Start/End: Complemental strand, 9483917 - 9483849
Alignment:
Q  261 aataatgcactattaaactccctaattctcctcacccc-aaaccaccaacctcctttctcaaacaaaca 328  Q
    ||||| ||| ||||||||||| ||||||| || ||||| ||||||||||||| ||| ||||||||||||    
T  9483917 aataaggcaatattaaactccataattcttcttacccctaaaccaccaaccttcttactcaaacaaaca 9483849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 27364801 - 27364845
Alignment:
Q  272 attaaactccctaattctcctcacccc-aaaccaccaacctcctt 315  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||    
T  27364801 attaaactccctaattctccttacccctaaaccaccaacctcctt 27364845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 36099609 - 36099689
Alignment:
Q  275 aaactccctaattctcctcac-cccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttatttt 354  Q
    |||||||||||||||||| || |||||||||||||||||||| |||   |||||||  |||||||| ||||| | ||||||    
T  36099609 aaactccctaattctccttacgcccaaaccaccaacctccttactcctgcaaacagtgttccagtccacccatgatatttt 36099689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 36192248 - 36192196
Alignment:
Q  295 ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaag 347  Q
    ||||||||||||||||||||| |||| ||||||||  ||||| ||||||||||    
T  36192248 ccccaaaccaccaacctccttactcatacaaacagagttccaatcaacccaag 36192196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 2793368 - 2793298
Alignment:
Q  107 ttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||| ||||||||||||||||||| |||||| |||||||||||||||||   ||| ||| ||||||||||||    
T  2793368 ttaaacttgcttgtgaactcaaaa-tatcattaaaaagactctaaaaatagtgaacgactgactgtcatcac 2793298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 21108322 - 21108393
Alignment:
Q  105 gcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||| ||||||| |||  ||||||||||||||| |||||||||||||    ||||||| |||||||||||    
T  21108322 gcttaatcttgcttttgagttcaaaaatatcataagaagactctaaaaagagcgaatgactgactgtcatca 21108393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 37641021 - 37640979
Alignment:
Q  137 taaaaagactctaaaaatgtggaatgacagactgtcatcacct 179  Q
    |||||||||||||||||||||  ||||| ||||||||||||||    
T  37641021 taaaaagactctaaaaatgtgatatgacggactgtcatcacct 37640979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 204 - 366
Target Start/End: Complemental strand, 40681826 - 40681662
Alignment:
Q  204 aacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcacccca-aac 302  Q
    |||||||||||||||||||||||||||||| |||||| | ||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |||    
T  40681826 aacaccctataccacaaactctccttttcaatcaacaactgccaacaccacttccctaataatgcactattaaactccctaattctcctcaccccataac 40681727  T
Q  303 caccaacctcctttctcaaacaaacaggattccagtcaacccaagtta-ttttttgtggtcgtca 366  Q
    ||||||||||||| ||||||||||||  |||||| ||||||||||||| ||||||||||| ||||    
T  40681726 caccaacctccttactcaaacaaacaaaattccaatcaacccaagttacttttttgtggttgtca 40681662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 8276175 - 8276012
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttctannnnnnnnnnnnn----gttgcttaagc 112  Q
    ||||| ||| |||||||||||||||| |||||||||||| |||||| |||||  ||||||||||||||||||                 | ||||| |||    
T  8276175 tcatcatgtgctccaaatcgtgatacgttttcaacaatcatgacacgattttgttttcttcaaaatcttctatttttcttgcttttcttgctgcttgagc 8276076  T
Q  113 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8276075 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatggaatgacagactgtcatca 8276012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 45288066 - 45288139
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||    
T  45288066 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatcac 45288139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 45291402 - 45291474
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  45291402 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 9273962 - 9274035
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |||||| ||||||||||||    
T  9273962 tgcttaagcttgcttgtgaactccaaaatatcataaaaagactttgaaaatgtgaaatgacggactgtcatcac 9274035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 9865570 - 9865642
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  9865570 tgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgactgtcatca 9865642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 263 - 362
Target Start/End: Original strand, 14316441 - 14316541
Alignment:
Q  263 taatgcactattaaactccctaattctcctcacccc-aaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttattttttgtggt 361  Q
    |||||||  ||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||| |||| | |||||||||| |||||||||||||    
T  14316441 taatgcaaaattaaactctctaattctccttacccccaaaccaccaacctccttactcaaacagacagaattctaatcaacccaagatattttttgtggt 14316540  T
Q  362 c 362  Q
    |    
T  14316541 c 14316541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 20081568 - 20081640
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||| |||||||||||    
T  20081568 tgcttaagcttgcttgtgaactcaaaaatatcataaaaacactctaaaaatagtgaatgactgactgtcatca 20081640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 10431549 - 10431481
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatctt 85  Q
    ||||||||| ||| ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||    
T  10431549 tcatcctgtgctctaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaatctt 10431481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 17730045 - 17729973
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||   ||| ||| |||||||||||    
T  17730045 tgcttaagcttgcttgtgaactcaaaaatatcataaaaggactctaaaaatagtgaaagactgactgtcatca 17729973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 9080448 - 9080376
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||   |||||||  ||||||||||    
T  9080448 tgcttaagcttgcttgtgaactcaaaaattacataaaaagactctaaaaataacgaatgactaactgtcatca 9080376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 4542237 - 4542166
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||| | ||||||||| ||| |||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  4542237 tcatcctatgctccaaatcatgacacattttcaacaatcgtgacacaaatttgctttcctcaaaatcttcta 4542166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 4596850 - 4596925
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||   ||||||  ||||||||||||    
T  4596850 gttgcttaatctttcttgtgagctcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatcac 4596925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 26556673 - 26556602
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||| ||| ||| ||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||    
T  26556673 tcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttcta 26556602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 4694795 - 4694745
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  4694795 tgcttaatcttgcttgtgaactcaaaaatatcatagaaagactctaaaaat 4694745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 10344688 - 10344638
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  10344688 tgcttaagcttgcttgtgaactcaaaaatttcataagaagactctaaaaat 10344638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 16559213 - 16559093
Alignment:
Q  203 caacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcacccc-aaa 301  Q
    |||||||||| |||||||||| ||| | ||   ||||| || |||||||||| ||| |||||  ||| ||||||| || ||||||||||| ||||| |||    
T  16559213 caacaccctaaaccacaaactatccctatctaccaacaacctccaacaccactttcctaatagagcattattaaattctctaattctccttacccccaaa 16559114  T
Q  302 ccaccaacctcctttctcaaa 322  Q
    |||||||||||||| ||||||    
T  16559113 ccaccaacctccttactcaaa 16559093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 16606449 - 16606569
Alignment:
Q  203 caacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcacccc-aaa 301  Q
    |||||||||| |||||||||| ||| | ||   ||||| || |||||||||| ||| |||||  ||| ||||||| || ||||||||||| ||||| |||    
T  16606449 caacaccctaaaccacaaactatccctatctaccaacaacctccaacaccactttcctaatagagcattattaaattctctaattctccttacccccaaa 16606548  T
Q  302 ccaccaacctcctttctcaaa 322  Q
    |||||||||||||| ||||||    
T  16606549 ccaccaacctccttactcaaa 16606569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 354
Target Start/End: Complemental strand, 38153725 - 38153634
Alignment:
Q  264 aatgcactattaaactccctaattctcctcacccc-aaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttatttt 354  Q
    |||||| |||||||||| ||||||||||| ||||| ||||||||||||||||| |||  ||||||||  ||||| || ||||||| ||||||    
T  38153725 aatgcaatattaaactcactaattctccttacccccaaaccaccaacctccttactcctacaaacagtgttccaatccacccaagctatttt 38153634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 2442114 - 2442185
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||| | || ||||||||||||| ||||||||||||||||||| | ||| ||||| ||| |||||||||    
T  2442114 tcatcctatgcttcaaatcgtgatacgttttcaacaatcgtgacacgaatttgctttcctcagaatcttcta 2442185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 345
Target Start/End: Complemental strand, 27854001 - 27853859
Alignment:
Q  204 aacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcacc-ccaaac 302  Q
    ||||||||| |||||||||| ||  | || |||||||||| |||||||||| | | |||||| ||   |||||| ||  | |||||||| ||| ||||||    
T  27854001 aacaccctaaaccacaaactatctctctccgtcaacaccctccaacaccacttccctaataaagctaaattaaattcttttattctccttacctccaaac 27853902  T
Q  303 caccaacctcctttctcaaacaaacaggattccagtcaaccca 345  Q
    ||||||||||||  |||  |||||||| |||||| ||||||||    
T  27853901 caccaacctcctgactccgacaaacagaattccaatcaaccca 27853859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 34236344 - 34236231
Alignment:
Q  203 caacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattct-taataatgcactattaaactccctaattctcctca-ccccaa 300  Q
    |||||||||| |||||||||||||  | |||  ||||| || |||||||||| |||| ||| || ||   ||||||||||||||||||||| | ||||||    
T  34236344 caacaccctaaaccacaaactctcggtatcacccaacaacctccaacaccac-ttctctaacaacgctaaattaaactccctaattctccttacccccaa 34236246  T
Q  301 accaccaacctcctt 315  Q
    |||||||||||||||    
T  34236245 accaccaacctcctt 34236231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 29375709 - 29375789
Alignment:
Q  236 caacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctca-ccccaaaccaccaacctcctt 315  Q
    ||||| ||||||||||||| | | || ||| ||  |||||||||||||||||||||| | ||||||||| |||||||||||    
T  29375709 caacatccgccaacaccacttccctagtaacgccatattaaactccctaattctccttacccccaaacctccaacctcctt 29375789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 26556584 - 26556510
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| |||||||||||||||||||| |||||||||| |||| ||| ||||||||   ||||||| |||||||||||    
T  26556584 gttgtttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 26556510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 41805323 - 41805281
Alignment:
Q  181 cctcctcaccatatttcgcaaccaacaccctataccacaaact 223  Q
    |||||||||||||| |||| ||||||||||||||||| |||||    
T  41805323 cctcctcaccatatctcgccaccaacaccctataccaaaaact 41805281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 9095708 - 9095748
Alignment:
Q  273 ttaaactccctaattctcctcaccc-caaaccaccaacctc 312  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  9095708 ttaaattccctaattctcctcaccctcaaaccaccaacctc 9095748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 27218687 - 27218651
Alignment:
Q  181 cctcctcaccatatttcgcaaccaacaccctatacca 217  Q
    |||||||||||||| |||| |||||||||||||||||    
T  27218687 cctcctcaccatatctcgccaccaacaccctatacca 27218651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 177 - 356
Target Start/End: Complemental strand, 40434288 - 40434108
Alignment:
Q  177 cctccctcctcaccatatttcgcaaccaacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaa 276  Q
    |||||||||||||| ||  |||| ||||||||||||||||||||||||||||| |||   |||||||  ||| ||||| ||| || ||| ||||||||||    
T  40434288 cctccctcctcaccgtacctcgccaccaacaccctataccacaaactctccttctcaactaacaccctacaataccactttcctagtaaagcactattaa 40434189  T
Q  277 actccctaattctcctcaccc-caaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttatttttt 356  Q
    |||||||||||||||| |||| |||||||||||||||||| |||||||| |||  |||||| |||||||||||||||||||    
T  40434188 actccctaattctccttaccctcaaaccaccaacctccttactcaaacacacataattccaatcaacccaagttatttttt 40434108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 180 - 329
Target Start/End: Complemental strand, 5634001 - 5633851
Alignment:
Q  180 ccctcctcaccatatttcgcaaccaacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaact 279  Q
    |||||||| |||||| ||| |  ||||||||||||||||||||||||||| |||   ||||  | |||||||||| | | ||||||||||||||||||||    
T  5634001 ccctcctctccatatctcgaagacaacaccctataccacaaactctccttctcaactaacaatctccaacaccacttacctaataatgcactattaaact 5633902  T
Q  280 ccctaattctcctcacc-ccaaaccaccaacctcctttctcaaacaaacag 329  Q
    | ||||||||||| ||| ||||||| |||||||||||||||||||||||||    
T  5633901 cactaattctccttacctccaaacctccaacctcctttctcaaacaaacag 5633851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 14571098 - 14571025
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14571098 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagaccgtcatcac 14571025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 5680543 - 5680469
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5680543 gttgtttaagcttgcttatgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagtctgtcatca 5680469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 41458113 - 41458196
Alignment:
Q  269 actattaaactccctaattctcctcaccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttatt 352  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||  |||| | |||||||||||||||    
T  41458113 actattaaactccctaaatctcctcaccccaaaccatcaacctcctttctcaaacaaacaaaattcaaatcaacccaagttatt 41458196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 354
Target Start/End: Complemental strand, 296418 - 296266
Alignment:
Q  203 caacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcacccc-aaa 301  Q
    |||||||||| || ||||||||||| | || |||||||  | |||||||||| | | ||| || ||| |||||| ||||||| ||||||| ||||| |||    
T  296418 caacaccctacacgacaaactctccctatctgtcaacaatctccaacaccacttacctaacaacgcattattaatctccctacttctccttacccccaaa 296319  T
Q  302 ccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttatttt 354  Q
    | |||||||||||| ||||||||||| | ||||||||||| ||||| ||||||    
T  296318 ctaccaacctccttactcaaacaaactgaattccagtcaatccaagatatttt 296266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 3718410 - 3718335
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||  ||||||||||||    
T  3718410 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaatactctaaaaatagtgaatgagtgactgtcatcac 3718335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 19865480 - 19865551
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||| |||||  ||||||||||||||||||    
T  19865480 tcatcctgtgctccaaatcgtgatacattttcaataatcgtgacacgattttgttttcttcaaaatcttcta 19865551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 40794264 - 40794214
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40794264 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 40794214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 52007359 - 52007432
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||   ||||||| ||||||||||||    
T  52007359 tgcttaagcttgcttttgaactcaacaatatcataaaaagactctaaaaatagcgaatgactgactgtcatcac 52007432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 12782178 - 12782106
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||   ||||||| |||||||||||    
T  12782178 tgcttaagcttgcttgtaaactcaaaaatatcataaaatgactctaaaaatagcgaatgactgactgtcatca 12782106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 19861124 - 19861192
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatctt 85  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||    
T  19861124 tcatcctgtgctccaaatcgtgatacgttttcaacaatcgtgacacaattttgtgttcttcaaaatctt 19861192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 27013304 - 27013228
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcata-aaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||   ||||||| ||||||||||||    
T  27013304 gttgcttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatcac 27013228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 5721808 - 5721879
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| || |||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||    
T  5721808 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttcta 5721879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 15431327 - 15431256
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| ||||||||||||| || ||||| ||||||||||||| ||||| |||||||||||||||||||    
T  15431327 tcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttcta 15431256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 15437941 - 15437870
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| ||||||||||||| || ||||| ||||||||||||| ||||| |||||||||||||||||||    
T  15437941 tcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttcta 15437870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 15430693 - 15430767
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||   ||||||| ||||||||||||    
T  15430693 tgcttaagcttgcttgtgaactcaaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatcac 15430767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 15437307 - 15437381
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||   ||||||| ||||||||||||    
T  15437307 tgcttaagcttgcttgtgaactcaaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatcac 15437381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 21419051 - 21419001
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21419051 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaat 21419001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 29324053 - 29323979
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||    |||||| |||||||||||    
T  29324053 gttgtttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 29323979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 44809830 - 44809904
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||    |||||| |||||||||||    
T  44809830 gttgtttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 44809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 24044985 - 24045058
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||| |||| |||||||||||||||||||| |||||||||||||||||   ||||||| ||||||||||||    
T  24044985 tgcttaatcttgtttgtgaactcaaaaatatcaaaaaaagactctaaaaataacgaatgactgactgtcatcac 24045058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 53093884 - 53093815
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttc 86  Q
    ||||||||| |||||| |||||| || ||||||||||||||| ||| |||||||||||||||||||||||    
T  53093884 tcatcctgtgctccaattcgtgacacgttttcaacaatcgtgtcacgattttactttcttcaaaatcttc 53093815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 3798644 - 3798704
Alignment:
Q  28 tccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    |||||||||||| |||||||||||||||||||||  ||||| |||||||||||||||||||    
T  3798644 tccaaatcgtgacacattttcaacaatcgtgacaagattttgctttcttcaaaatcttcta 3798704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 53010386 - 53010458
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||   ||||||| |||| ||||||    
T  53010386 tgcttaatcttacttgtgaactcaaaaatatcataaaaagactctaaaaataatgaatgactgactatcatca 53010458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 18910767 - 18910696
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||| ||| ||| ||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||    
T  18910767 tcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttcta 18910696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 34320775 - 34320822
Alignment:
Q  107 ttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  34320775 ttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaat 34320822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 49269804 - 49269734
Alignment:
Q  107 ttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||| |||  ||||||||||||||||||||| |||||||||||||  |||||| ||||||||||||    
T  49269804 ttaagcttgtttgctaactcaaaaatatcataaaaaaactctaaaaatgtaaaatgactgactgtcatcac 49269734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 346
Target Start/End: Complemental strand, 33101022 - 33100877
Alignment:
Q  202 ccaacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcaccc-caa 300  Q
    ||||||||||| |||||||||||||||| ||   ||||||||||||||||||| | | ||| ||| |   |||||| ||  | |||||||| |||| |||    
T  33101022 ccaacaccctaaaccacaaactctccttctccaccaacacccgccaacaccacttccctaacaattctaaattaaattcttttattctccttaccctcaa 33100923  T
Q  301 accaccaacctcctttctcaaacaaacaggattccagtcaacccaa 346  Q
    ||| ||||||||||  ||| |||||| || ||||||||||||||||    
T  33100922 acctccaacctcctgactctaacaaatagaattccagtcaacccaa 33100877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 44164074 - 44164001
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcata-aaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| |||||||   ||||||| |||||||||||    
T  44164074 tgcttaatcttgcttgtgaactcaaaaatatcataaaaaagactttaaaaatagtgaatgactgactgtcatca 44164001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 19826776 - 19826700
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaa-tatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||| ||| |||||||||||||||| | |||||||||||||||||||||   ||||||| ||||||||||||    
T  19826776 gttgcttaatcttacttgtgaactcaaaaaatttcataaaaagactctaaaaatagcgaatgactgactgtcatcac 19826700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 12237517 - 12237446
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    |||||||||| |  |||| |||| |||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  12237517 tcatcctgtattttaaattgtgacacattttcgacaatcgtgacacgattttgctttcttcaaaatcttcta 12237446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 19820021 - 19819950
Alignment:
Q  106 cttaagcttgcttgtgaactcaaaaa-tatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||| |||||||||||||||||||| ||||||||||||||| |||||||   ||||||| |||||||||||    
T  19820021 cttaatcttgcttgtgaactcaaaaaatatcataaaaagactttaaaaatagcgaatgactgactgtcatca 19819950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 5669778 - 5669720
Alignment:
Q  30 caaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||| |||| || ||||||||||||||||||| ||||| |||||||||||||||||||    
T  5669778 caaattgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttcta 5669720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 33410812 - 33410870
Alignment:
Q  30 caaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    |||||||| | || ||||||||||||||||||| ||||| |||||||||||||||||||    
T  33410812 caaatcgtaacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttcta 33410870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 49269885 - 49269827
Alignment:
Q  30 caaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    |||||||||| || |||||||||||||||| || ||||| |||||||||||||||||||    
T  49269885 caaatcgtgacacgttttcaacaatcgtgatacgattttgctttcttcaaaatcttcta 49269827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 27677893 - 27677966
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||| |||| ||||||||||||||||||||| |||||||||||||||||   |||| || |||||||||||    
T  27677893 tgcttaatcttgattgtgaactcaaaaatatcataaaaaagactctaaaaatagtgaataactgactgtcatca 27677966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 35509273 - 35509229
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagact 146  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||    
T  35509273 gttgcttaatcttgcttgtgaactcaaaaatatcatataaagact 35509229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 9717114 - 9717043
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| ||| |||| |||  || ||||||||||||||||||| ||||| |||||||| ||||||||||    
T  9717114 tcatcctgtgctctaaattgtgccacgttttcaacaatcgtgacacgattttgctttcttcgaaatcttcta 9717043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 15431233 - 15431164
Alignment:
Q  107 ttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| ||||||||||||||||||| |||||| |||||||||||||||||   ||||||| |||||||||||    
T  15431233 ttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15431164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 15437847 - 15437778
Alignment:
Q  107 ttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| ||||||||||||||||||| |||||| |||||||||||||||||   ||||||| |||||||||||    
T  15437847 ttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15437778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 38655797 - 38655847
Alignment:
Q  295 ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaaccca 345  Q
    |||||||| |||||||||||| |||| |||||||| |||||||||||||||    
T  38655797 ccccaaacaaccaacctccttactcatacaaacagaattccagtcaaccca 38655847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 40617663 - 40617720
Alignment:
Q  31 aaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| || ||||||||||||||| ||| ||||| | |||||||||||||||||    
T  40617663 aaatcgtgacacgttttcaacaatcgtggcacgattttgccttcttcaaaatcttcta 40617720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 5760122 - 5760010
Alignment:
Q  203 caacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcaccccaaac 302  Q
    |||||||||| |||| ||||||||||| ||   ||||| ||||||||||||  | ||||  |   || ||||||||||| |||||||||  ||| |||||    
T  5760122 caacaccctaaaccataaactctccttctccaccaacaaccgccaacaccatttccttagaagaacaatattaaactccttaattctccgtaccgcaaac 5760023  T
Q  303 caccaacctcctt 315  Q
    |||||||||||||    
T  5760022 caccaacctcctt 5760010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 27691952 - 27692003
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaat 154  Q
    ||||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  27691952 tgcttaatcttgcttgtgaattcaaaaatatcgtaaaaaagactctaaaaat 27692003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 5680618 - 5680561
Alignment:
Q  31 aaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    |||| |||| || ||||||||||||||||||  ||||| |||| ||||||||||||||    
T  5680618 aaattgtgacacgttttcaacaatcgtgacatgattttgcttttttcaaaatcttcta 5680561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 5669702 - 5669627
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||| |||| ||||||||||||||| |||||||||| |||| ||| ||||||||   ||||||| ||||||||||||    
T  5669702 gttgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 5669627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 10008640 - 10008592
Alignment:
Q  295 ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacc 343  Q
    ||||||||||||||||||||| |||| ||||||||  ||||| ||||||    
T  10008640 ccccaaaccaccaacctccttactcatacaaacagagttccaatcaacc 10008592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 19837825 - 19837877
Alignment:
Q  295 ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaag 347  Q
    |||||||||||||||| |||| |||| ||||| || ||||||||| |||||||    
T  19837825 ccccaaaccaccaacccccttactcatacaaatagaattccagtctacccaag 19837877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 354
Target Start/End: Complemental strand, 20509447 - 20509363
Alignment:
Q  271 tattaaactccctaattctcctcaccccaaacc-accaacctcctttctcaaacaaacaggattccagtcaacccaagttatttt 354  Q
    |||||||||| ||||| ||||| ||||| |||| |||||||||||| |||  ||||||||  |||||||| || |||| ||||||    
T  20509447 tattaaactctctaatactccttacccccaacccaccaacctccttactcctacaaacagtgttccagtccactcaagatatttt 20509363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 33410888 - 33410963
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||| |||| ||||||||||||||| |||||||||| |||| ||| ||||||||   ||||||| ||||||||||||    
T  33410888 gttgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 33410963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 37104113 - 37104149
Alignment:
Q  52 aatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  37104113 aatcgtgacacgattttgctttcttcaaaatcttcta 37104149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 38296284 - 38296324
Alignment:
Q  184 cctcaccatatttcgcaaccaacaccctataccacaaactc 224  Q
    ||||||||||| |||| ||||||||||||||||| ||||||    
T  38296284 cctcaccatatctcgccaccaacaccctataccaaaaactc 38296324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 48636749 - 48636709
Alignment:
Q  136 ataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||   |||||||||||||||||||    
T  48636749 ataaaaagactctaaaaataacgaatgacagactgtcatca 48636709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 56198103 - 56198028
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||| |||||||||||||||||||| |||| ||||| |||| ||| ||||||||   ||||||| ||||||||||||    
T  56198103 gttgtttaagcttgcttgtgaactc-aaaacatcatgaaaatgacactaaaaataacgaatgactgactgtcatcac 56198028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 356
Target Start/End: Original strand, 8249421 - 8249601
Alignment:
Q  177 cctccctcctcaccatatttcgcaaccaacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaa 276  Q
    |||||||||||||| ||  |||| |||||||| |||||||||||||||||||| |||   ||||||  |||| ||||| ||| || ||| ||||||||||    
T  8249421 cctccctcctcaccgtacctcgccaccaacactctataccacaaactctccttctcaactaacaccatccaagaccactttcctagtaaagcactattaa 8249520  T
Q  277 actccctaattctcctca-ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttatttttt 356  Q
    |||||||||||||||| | ||||||||||||||||||||| |||||||| |||  |||||| |||||||||||||||||||    
T  8249521 actccctaattctccttacccccaaaccaccaacctccttactcaaacacacataattccaatcaacccaagttatttttt 8249601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 43490956 - 43490791
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttctannnnnnnnnnnnn----gttgcttaagc 112  Q
    ||||||||| |||| |||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||                 | |||||||||    
T  43490956 tcatcctgtgctcctaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagc 43490857  T
Q  113 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcacc 178  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43490856 ttgtttgtgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacagactgtcatcacc 43490791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 22937892 - 22938056
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttctannnnnnnnnnnnn----gttgcttaagc 112  Q
    ||||| ||| |||||||||||||||| |||||||||| |||| ||| ||||| |||||||||||||||||||                 | |||||||||    
T  22937892 tcatcttgtgctccaaatcgtgatacgttttcaacaaccgtggcacgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagc 22937991  T
Q  113 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22937992 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaacgtggaatgacagactgtcatcac 22938056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 32837246 - 32837083
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttctannnnnnnnnnnnn----gttgcttaagc 112  Q
    ||||||| | ||||||||||||| || |||||||||||| |||||| ||||| |||||||||||||||||||                 | |||||||||    
T  32837246 tcatcctatgctccaaatcgtgacacgttttcaacaatcatgacacgattttgctttcttcaaaatcttctatttttctttcttttcttgctgcttaagc 32837147  T
Q  113 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32837146 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacatactgtcatca 32837083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 37214838 - 37214766
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37214838 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 37214766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 7270305 - 7270241
Alignment:
Q  112 cttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  7270305 cttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgacagactgtcatca 7270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 2836752 - 2836699
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtg 157  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2836752 tgcttaagtttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtg 2836699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 18031782 - 18031709
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| |||| |||||||    
T  18031782 tgcttaaacttgcttttgaactcgaaaatatcataaaaagactctaaaaatatggaatgacggactatcatcac 18031709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 28442018 - 28442086
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatctt 85  Q
    ||||||||| ||| ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||    
T  28442018 tcatcctgtgctctaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaatctt 28442086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 28788329 - 28788401
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    |||||| |||||||||||    
T  28788329 tgcttaagcttgcttgtgaactaaaaaatatcataaaaagactctaaaaatagcaaatgactgactgtcatca 28788401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 14016962 - 14017037
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||    |||||| ||||||||||||    
T  14016962 gttgtttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatcac 14017037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 21336667 - 21336742
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||   ||||||| |||||||||||    
T  21336667 gttgcttaagcttgcttgtgaactcaaaaatataataaaaaagactctaaaaatagtgaatgactgactgtcatca 21336742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 39191403 - 39191353
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39191403 tgcttaagcttgcttgtgaactcaaaagtatcataaaaagactctaaaaat 39191353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 21827968 - 21828041
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||   ||||||| |||||||||||    
T  21827968 tgcttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 21828041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 30065636 - 30065584
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  30065636 gttgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 30065584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 42061649 - 42061578
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||| ||| || |||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||    
T  42061649 tcatcatgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttcta 42061578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 40916812 - 40916892
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcat---aaaaagactctaaaaatgtggaatgacagactgtcatcacct 179  Q
    ||||||||||||||||||||||||||||||||| ||   |||||||||||||||||    |||||| ||||||||||||||    
T  40916812 gttgcttaagcttgcttgtgaactcaaaaatatgataaaaaaaagactctaaaaatagcaaatgactgactgtcatcacct 40916892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 4100365 - 4100413
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaa 152  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  4100365 tgcttaatcttgcctgtgaactcaaaaatatcataaaaagactctaaaa 4100413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 31863035 - 31862964
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||| ||| ||| ||||||||| || ||||||||||||||||||| ||||| ||||||||||||| |||||    
T  31863035 tcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaattttcta 31862964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 37214929 - 37214858
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| ||||||||||||| |  ||||||||||| |||| || ||||| |||||||||||||||||||    
T  37214929 tcatcctgtgctccaaatcgtgacatgttttcaacaattgtgatacgattttgctttcttcaaaatcttcta 37214858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 17747691 - 17747617
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| |||||||| ||| ||||||||||| |||||||||||||||||||||||    |||||| |||||||||||    
T  17747691 gttgtttaagctttcttatgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 17747617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 354
Target Start/End: Original strand, 12832547 - 12832631
Alignment:
Q  271 tattaaactccctaattctcctcacccc-aaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttatttt 354  Q
    |||||||||| ||||| ||||| ||||| ||||||||||||||||| |||  ||||||||  |||||||| ||||||| ||||||    
T  12832547 tattaaactctctaatactccttacccccaaaccaccaacctccttactcctacaaacagtgttccagtccacccaagatatttt 12832631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 354
Target Start/End: Original strand, 12864522 - 12864606
Alignment:
Q  271 tattaaactccctaattctcctcacccc-aaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttatttt 354  Q
    |||||||||| ||||| ||||| ||||| ||||||||||||||||| |||  ||||||||  |||||||| ||||||| ||||||    
T  12864522 tattaaactctctaatactccttacccccaaaccaccaacctccttactcctacaaacagtgttccagtccacccaagatatttt 12864606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 2837603 - 2837641
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaa 142  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  2837603 tgcttaagcttgcttgtgaactccaaaatatcataaaaa 2837641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 3581043 - 3580991
Alignment:
Q  295 ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaag 347  Q
    |||||||| |||||||||||| |||| ||||||||  ||||||||||||||||    
T  3581043 ccccaaactaccaacctccttactcatacaaacagagttccagtcaacccaag 3580991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 346
Target Start/End: Complemental strand, 15772855 - 15772783
Alignment:
Q  275 aaactccctaattctcctcacccc-aaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaa 346  Q
    ||||||||||||||| || ||||| ||||| |||||||| |||||||||||||||   ||||| |||||||||    
T  15772855 aaactccctaattctgctgacccccaaacctccaacctcttttctcaaacaaacatagttccaatcaacccaa 15772783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 30723557 - 30723601
Alignment:
Q  272 attaaactccctaattctcctca-ccccaaaccaccaacctcctt 315  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  30723557 attaaactccctaattctccttacccccaaaccaccaacctcctt 30723601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 355
Target Start/End: Original strand, 32018962 - 32019114
Alignment:
Q  204 aacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcaccccaaa-c 302  Q
    ||||||||| |||||||||| ||  | || |||||||||| |||||||||| | | |||||| ||   |||||| ||  | |||||||| ||||| || |    
T  32018962 aacaccctaaaccacaaactatctctctccgtcaacaccctccaacaccacttccctaataaagctaaattaaattcttttattctccttacccccaagc 32019061  T
Q  303 caccaacctcctttctcaaacaaacaggattccagtcaacccaagttattttt 355  Q
    ||||||||||||  |||  |||||||| |||||| ||||||||| | ||||||    
T  32019062 caccaacctcctgactccgacaaacagaattccaatcaacccaaataattttt 32019114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 336
Target Start/End: Original strand, 35637710 - 35637865
Alignment:
Q  181 cctcctcaccatatttcgcaaccaacaccctataccacaaactctccttt-tcagtcaacacccgccaacaccacattcttaataatgcactattaaact 279  Q
    ||||||| |||||  |||||||||||||| | ||||| |||| ||||| | |||  ||||| || |||||||||| ||| ||||||||||  ||| ||||    
T  35637710 cctcctcgccatacctcgcaaccaacaccttgtaccataaac-ctcctctatcaaccaacaacctccaacaccactttcctaataatgcaaaatttaact 35637808  T
Q  280 ccctaattctcctcaccccaaaccaccaacctcctttctcaaacaaacaggattcca 336  Q
    |||| | |  |||||||||||||| |||  ||||||||  ||||||| || ||||||    
T  35637809 ccctcaattgcctcaccccaaacctccatgctcctttcgtaaacaaatagtattcca 35637865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 31862946 - 31862872
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| |||||||||||||||||||| ||||||| || |||| ||| ||||||||  |||||||| |||||||||||    
T  31862946 gttgtttaagcttgcttgtgaactc-aaaatattatgaaaatgacactaaaaataaggaatgactgactgtcatca 31862872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 25329505 - 25329456
Alignment:
Q  127 aaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||| |||||||||||   ||||||| |||||||||||    
T  25329505 aaaaatatcataaaaaaactctaaaaatagcgaatgactgactgtcatca 25329456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 42039267 - 42039234
Alignment:
Q  184 cctcaccatatttcgcaaccaacaccctatacca 217  Q
    |||||||||||||||| |||||||||||||||||    
T  42039267 cctcaccatatttcgccaccaacaccctatacca 42039234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 303
Target Start/End: Original strand, 14921716 - 14921816
Alignment:
Q  203 caacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcaccccaaac 302  Q
    ||||||| || ||||||| |||||||| |||  ||||| ||  ||||||||  ||| ||| || ||| |||||||||||||||||||| | ||||| |||    
T  14921716 caacaccttacaccacaagctctccttctcaaccaacaaccttcaacaccattttcctaacaacgcattattaaactccctaattctcatgacccccaac 14921815  T
Q  303 c 303  Q
    |    
T  14921816 c 14921816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 28563283 - 28563323
Alignment:
Q  137 taaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||||||||||||||||||||  ||||| ||||||||||||    
T  28563283 taaaaagactctaaaaatgtgatatgacggactgtcatcac 28563323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 9953199 - 9953036
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttctannnnnnnnnnnnn----gttgcttaagc 112  Q
    |||| |||| ||||||||||||| || ||||||||||||||||||  ||||| |||||||||||||||||||                 | |||||||||    
T  9953199 tcattctgtgctccaaatcgtgacacgttttcaacaatcgtgacatgattttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagc 9953100  T
Q  113 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9953099 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacagactgtcatca 9953036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 203 - 351
Target Start/End: Original strand, 2540551 - 2540700
Alignment:
Q  203 caacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctca-ccccaaa 301  Q
    |||||||||| |||||||||| ||||| ||  |||||| || |||||||||| ||| |||||  ||| ||||||| || ||||||||||| | |||||||    
T  2540551 caacaccctaaaccacaaactatccttatctatcaacaacctccaacaccactttcctaatagagcattattaaattctctaattctccttatccccaaa 2540650  T
Q  302 ccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttat 351  Q
    |||||||||||||| || |||||||||  ||| ||||||||||| |||||    
T  2540651 ccaccaacctccttacttaaacaaacaaaatttcagtcaacccatgttat 2540700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 28666104 - 28666176
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  28666104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 28666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 10289260 - 10289186
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||  ||||||||||    
T  10289260 gttgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgacttactgtcatca 10289186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 34501577 - 34501507
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttct 87  Q
    ||||||| | ||||||||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||    
T  34501577 tcatcctatgctccaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcatcaaaatcttct 34501507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 315
Target Start/End: Original strand, 34600866 - 34600976
Alignment:
Q  206 caccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctca-ccccaaacca 304  Q
    ||||||| |||||| ||||||| | ||   ||||| ||||||||||||| | ||||| || |||||||||||||||||||||||||| | ||||||||||    
T  34600866 caccctaaaccacatactctccctctccaccaacatccgccaacaccacttccttaacaacgcactattaaactccctaattctccttacccccaaacca 34600965  T
Q  305 ccaacctcctt 315  Q
    | |||||||||    
T  34600966 ctaacctcctt 34600976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 315
Target Start/End: Original strand, 34627411 - 34627521
Alignment:
Q  206 caccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctca-ccccaaacca 304  Q
    ||||||| |||||| ||||||| | ||   ||||| ||||||||||||| | ||||| || |||||||||||||||||||||||||| | ||||||||||    
T  34627411 caccctaaaccacatactctccctctccaccaacatccgccaacaccacttccttaacaacgcactattaaactccctaattctccttacccccaaacca 34627510  T
Q  305 ccaacctcctt 315  Q
    | |||||||||    
T  34627511 ctaacctcctt 34627521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 366
Target Start/End: Original strand, 10304142 - 10304300
Alignment:
Q  206 caccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctca-ccccaaacca 304  Q
    |||||||||||||||||||||||| ||   ||||| | ||||||||||| | |  ||||| |  | ||||||||| ||||||||||| | ||||||||||    
T  10304142 caccctataccacaaactctccttatccaccaacaactgccaacaccacttccccaataaagtgcaattaaactctctaattctccttacccccaaacca 10304241  T
Q  305 ccaacctcctttctcaaacaaacaggattccagtcaacccaagttatttt-ttgtggtcgtca 366  Q
    ||||||||     ||||||||||||  ||||| |||||||||||||||||  |||||||||||    
T  10304242 ccaacctc----ttcaaacaaacagagttccaatcaacccaagttattttcctgtggtcgtca 10304300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 23379650 - 23379714
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaa 81  Q
    ||||| ||| ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  23379650 tcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaa 23379714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 23388989 - 23389053
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaa 81  Q
    ||||| ||| ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  23388989 tcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaa 23389053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 2371573 - 2371505
Alignment:
Q  20 tcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    |||||| ||| |||||  |||||||||||||||||||||| || ||||| |||||||||||||||||||    
T  2371573 tcctgtgctctaaatctcgatacattttcaacaatcgtgatacgattttgctttcttcaaaatcttcta 2371505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 20181343 - 20181295
Alignment:
Q  106 cttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  20181343 cttaagcttgcttgtgaactcaaaaatatcacaaaaggactctaaaaat 20181295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 22154648 - 22154696
Alignment:
Q  106 cttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  22154648 cttaagcttgcttgtgaactcaaaaatatcacaaaaggactctaaaaat 22154696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 34722173 - 34722253
Alignment:
Q  236 caacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctca-ccccaaaccaccaacctcctt 315  Q
    ||||| ||||||||||||| | ||||| || |||||||||||||||||||||||||| | ||||||||||  |||||||||    
T  34722173 caacatccgccaacaccacttccttaacaacgcactattaaactccctaattctccttacccccaaaccagtaacctcctt 34722253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 5739026 - 5739097
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||| | ||||||||||||| |  |||| |||||||||||||| ||||| |||||||||||||||||||    
T  5739026 tcatcctttgctccaaatcgtgacatgtttttaacaatcgtgacacgattttgctttcttcaaaatcttcta 5739097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 13004472 - 13004434
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaa 142  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13004472 tgcttaagcttgcttgtgaactcaaaaatatcataaaaa 13004434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 366
Target Start/End: Original strand, 32197862 - 32197959
Alignment:
Q  271 tattaaactccctaattctcctca-ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttatttt-ttgtggtcgtca 366  Q
    |||||||||||||||||||||| | ||||||||| ||||||||||| | |  ||| |||| ||||||||| ||||||| ||||||  |||||||||||    
T  32197862 tattaaactccctaattctcctaacccccaaaccgccaacctccttaccccgacagacagtattccagtccacccaagatattttcatgtggtcgtca 32197959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 314
Target Start/End: Original strand, 18016708 - 18016821
Alignment:
Q  202 ccaacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcaccccaaa 301  Q
    |||||||||||||||||||||| ||||| ||   ||||||||||||||||||| | | |||||| |    |||||| ||  |||||||||| ||||||||    
T  18016708 ccaacaccctataccacaaactttccttctccaccaacacccgccaacaccacttccctaataacgttaaattaaattctttaattctccttaccccaaa 18016807  T
Q  302 -ccaccaacctcct 314  Q
     || ||||||||||    
T  18016808 tcctccaacctcct 18016821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 17713045 - 17712993
Alignment:
Q  295 ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaag 347  Q
    ||||||||||||||||||||| || ||||||||||  ||||| ||||||||||    
T  17713045 ccccaaaccaccaacctccttacttaaacaaacagagttccaatcaacccaag 17712993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 19154280 - 19154344
Alignment:
Q  176 acctccctcctcaccatatttcgcaaccaacaccctataccacaaactctccttttcagtcaaca 240  Q
    |||||||||||| |||||| ||||   ||||||||||||||||| ||||| ||||| ||||||||    
T  19154280 acctccctcctctccatatctcgccgacaacaccctataccacatactcttctttttagtcaaca 19154344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 33753621 - 33753569
Alignment:
Q  295 ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaag 347  Q
    ||||||||||||| ||||||| |||| |||||||| ||| |||||||||||||    
T  33753621 ccccaaaccaccagcctccttactcatacaaacagtatttcagtcaacccaag 33753569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 19616329 - 19616279
Alignment:
Q  295 ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaaccca 345  Q
    |||||||||||||||||||||||||| ||||| ||  | ||||||||||||    
T  19616329 ccccaaaccaccaacctcctttctcagacaaatagtttcccagtcaaccca 19616279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 14968822 - 14968782
Alignment:
Q  137 taaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||||||||||||||||||||  ||||| ||||||||||||    
T  14968822 taaaaagactctaaaaatgtgatatgacggactgtcatcac 14968782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 19350519 - 19350555
Alignment:
Q  181 cctcctcaccatatttcgcaaccaacaccctatacca 217  Q
    |||||||||||||| |||| |||||||||||||||||    
T  19350519 cctcctcaccatatctcgccaccaacaccctatacca 19350555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 29976573 - 29976537
Alignment:
Q  181 cctcctcaccatatttcgcaaccaacaccctatacca 217  Q
    |||||||||||||| |||| |||||||||||||||||    
T  29976573 cctcctcaccatatctcgccaccaacaccctatacca 29976537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 16185584 - 16185659
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcacct 179  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16185584 tgcttaagcttgtttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcacct 16185659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 354
Target Start/End: Complemental strand, 35503056 - 35502903
Alignment:
Q  202 ccaacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctca-ccccaa 300  Q
    ||||||||||| |||||||||||||||| ||  |||||| ||||||||||||| | |  || || |||||||||||||||||||||||||| | |||||     
T  35503056 ccaacaccctaaaccacaaactctccttctccatcaacaaccgccaacaccacttcccaaacaaagcactattaaactccctaattctccttacccccag 35502957  T
Q  301 accaccaacctcctttctcaaacaaacaggattccagtcaacccaagttatttt 354  Q
    ||| ||||||||||| |||  |||||||| ||||||||||||||||| ||||||    
T  35502956 accgccaacctccttcctcccacaaacagaattccagtcaacccaagatatttt 35502903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 35411840 - 35411676
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttctannnnnnnnnnnnn----gttgcttaagc 112  Q
    |||||||||  |||||||||||| || ||||| ||||||||||||| ||||| |||||||||||||||||||                 | ||||||||     
T  35411840 tcatcctgtgttccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttctttgttttcttgctgcttaagt 35411741  T
Q  113 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatg-tggaatgacagactgtcatca 176  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  35411740 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgttgaaatgacagactgtcatca 35411676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 9380084 - 9380012
Alignment:
Q  103 ttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatc 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||    
T  9380084 ttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgactgtcatc 9380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 31548623 - 31548551
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  31548623 tgcttaagcttggttgtgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacgaactgtcatca 31548551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 53815043 - 53814971
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  53815043 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 53814971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 19302290 - 19302365
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||    
T  19302290 gttgtttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatgaaatgacggactatcatcac 19302365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 34984684 - 34984759
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||    
T  34984684 gttgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatcac 34984759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 54460441 - 54460367
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  54460441 gttgcttaagattgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 54460367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 16243238 - 16243166
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||| || ||||||||    
T  16243238 tgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgattgtcatca 16243166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 54736776 - 54736828
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  54736776 gttgcttaagcttgcttgtgaactcaaaagtatcataaaaagactctaaaaat 54736828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 538178 - 538107
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    |||| |||| ||||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||    
T  538178 tcattctgtgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttcta 538107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 18645578 - 18645649
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| || |||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||    
T  18645578 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttcta 18645649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 10880848 - 10880798
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10880848 tgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 10880798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 43808950 - 43808900
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43808950 tgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 43808900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 19305478 - 19305547
Alignment:
Q  107 ttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| || |||||  || ||||||||    
T  19305478 ttaagcttgcttgtgaactcaaaaatattataaaaagactctaaaaatatgaaatgatggattgtcatca 19305547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 29344700 - 29344773
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataa-aaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  29344700 tgcttaatcttgcttgtgaactcaaaaatatcataagaaagactctaaaaatagtgaatgactgactgtcatca 29344773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 3839865 - 3839789
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcat---aaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||||||||||||||||||||||||||||   ||||| |||||||||||   ||||||| ||||||||||||    
T  3839865 tgcttaagcttgcttgtgaactcaaaaatatcattaaaaaaaaactctaaaaatagtgaatgactgactgtcatcac 3839789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 20729404 - 20729477
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||||||||||   ||||||| |||||||||||    
T  20729404 tgcttaagcttgcttgtgaactaaaaaatatcataaaaaaaactctaaaaatagcgaatgactgactgtcatca 20729477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 41976390 - 41976321
Alignment:
Q  107 ttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||||   ||||||| |||||||||||    
T  41976390 ttaatcttgcttgtgaactcaaaaatattataaaaacactctaaaaatagcgaatgactgactgtcatca 41976321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 6922053 - 6921985
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatctt 85  Q
    ||||| ||| ||||||||||||| || ||||| ||||||||||||| ||||| ||||||||||||||||    
T  6922053 tcatcatgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatctt 6921985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 23299390 - 23299461
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||| ||| |||||||| |||| || ||||| ||||||||||||| ||||| |||||||||||||||||||    
T  23299390 tcatcttgtgctccaaattgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttcta 23299461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 52198468 - 52198397
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||| ||| ||| ||||||||| || ||||||||||||||||||  ||||| |||||||||||||||||||    
T  52198468 tcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacatgattttgctttcttcaaaatcttcta 52198397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 10884179 - 10884110
Alignment:
Q  19 atcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||| || |||||||||| |  ||||||||||||||||||| ||||| |||||||| ||||||||||    
T  10884179 atcctgtgcttcaaatcgtgacaggttttcaacaatcgtgacacgattttgctttcttcgaaatcttcta 10884110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 16185493 - 16185561
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatctt 85  Q
    ||||||||| ||| ||| ||||| |  ||||||||||||||||||| ||||| ||||||||||||||||    
T  16185493 tcatcctgtgctctaaaacgtgacatgttttcaacaatcgtgacacgattttgctttcttcaaaatctt 16185561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 10884087 - 10884017
Alignment:
Q  107 ttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||| ||||||||||||||||||| |||||| |||||||||||||||||   ||||||| ||||||||||||    
T  10884087 ttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcac 10884017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 23299484 - 23299554
Alignment:
Q  107 ttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||| ||||||||||||||||||| |||||| |||||||||||||||||   ||||||| ||||||||||||    
T  23299484 ttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcac 23299554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 355
Target Start/End: Original strand, 45967990 - 45968101
Alignment:
Q  245 ccaacaccacattcttaataatgcactattaaactccctaattctcctca-ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacc 343  Q
    |||||||||| | |||||||| ||| | |||||||||||||||||||| | |||||||| |||||||||||  |||  ||||| ||  | ||||||||||    
T  45967990 ccaacaccacttccttaataaagcaatgttaaactccctaattctccttatccccaaactaccaacctcctgactccgacaaatagactgccagtcaacc 45968089  T
Q  344 caagttattttt 355  Q
    ||| | ||||||    
T  45968090 caaatgattttt 45968101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 25844806 - 25844736
Alignment:
Q  245 ccaacaccacattcttaataatgcactattaaactccctaattctcctcaccccaaaccaccaacctcctt 315  Q
    |||||||||| | | || ||| |||| ||| ||||||||||||||| | ||||||||||||||||||||||    
T  25844806 ccaacaccacttccctagtaacgcacaattgaactccctaattctcattaccccaaaccaccaacctcctt 25844736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 18689454 - 18689342
Alignment:
Q  203 caacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcaccccaaac 302  Q
    |||||||||| |||| ||||||||||| ||   ||||| ||||||||||||  | ||||  |   || ||||||||||| |||||||||  ||| |||||    
T  18689454 caacaccctaaaccataaactctccttctccaccaacaaccgccaacaccatttccttagaagaacaatattaaactccttaattctccgtaccgcaaac 18689355  T
Q  303 caccaacctcctt 315  Q
    |||||||||||||    
T  18689354 caccaacctcctt 18689342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 19652207 - 19652155
Alignment:
Q  295 ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaag 347  Q
    ||||||||||||||| ||||| |||| ||||||||  ||||||||||||||||    
T  19652207 ccccaaaccaccaacttccttactcatacaaacagagttccagtcaacccaag 19652155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 538084 - 538015
Alignment:
Q  107 ttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| |||| |||||||||||||| |||||| |||||||||||||||||   ||||||| |||||||||||    
T  538084 ttaaacttgtttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 538015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 6921959 - 6921890
Alignment:
Q  107 ttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| ||||||||||||||| |||||||||| |||||| ||||||||||   ||||||| |||||||||||    
T  6921959 ttaaacttgcttgtgaactc-aaaatatcatgaaaaaggctctaaaaatagtgaatgactgactgtcatca 6921890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 52250689 - 52250647
Alignment:
Q  181 cctcctcaccatatttcgcaaccaacaccctataccacaaact 223  Q
    |||||||||||||| |||| ||||||||||||||||| |||||    
T  52250689 cctcctcaccatatctcgccaccaacaccctataccataaact 52250647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 25132771 - 25132816
Alignment:
Q  271 tattaaactccctaattctcctca-ccccaaaccaccaacctcctt 315  Q
    |||||||||| ||||||||||| | |||||||||||||||||||||    
T  25132771 tattaaactctctaattctccttagccccaaaccaccaacctcctt 25132816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 19875818 - 19875854
Alignment:
Q  181 cctcctcaccatatttcgcaaccaacaccctatacca 217  Q
    |||||||||||||| |||| |||||||||||||||||    
T  19875818 cctcctcaccatatctcgccaccaacaccctatacca 19875854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 55032789 - 55032825
Alignment:
Q  52 aatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  55032789 aatcgtgacacgattttgctttcttcaaaatcttcta 55032825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 246278 - 246351
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  246278 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagaccgtcatcac 246351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 291124 - 291055
Alignment:
Q  19 atcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||| ||| ||||| |||||||||||||    
T  291124 atcctgtgctccaaatcgtgacacgttttcaacaatcgtgacacaaatttgctttcctcaaaatcttcta 291055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 26408 - 26253
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttctannnnnnnnnnnnngttgcttaagcttgc 116  Q
    ||||||||| || |||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||             | |||||| | ||||    
T  26408 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcat-----gctgcttatgtttgc 26314  T
Q  117 ttgtgaactcaaaaatatcataaaaagactcta-aaaatgtggaatgacagactgtcatca 176  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  26313 ttgtgaactcaaaaatatcataaaaagactctaaaaaatgtggaatgacagactatcatca 26253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 197314 - 197242
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  197314 tgcttatgcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 197242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 14421027 - 14420864
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttctannnnnnnnnnnnn----gttgcttaagc 112  Q
    |||||||||  |||||||||||| || |||||||||||||||| || ||||| |||||||||||||||| ||                 |||||||||||    
T  14421027 tcatcctgtgttccaaatcgtgacacgttttcaacaatcgtgatacgattttgctttcttcaaaatcttatatttttcttgcttttcttgttgcttaagc 14420928  T
Q  113 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14420927 ttgcttgtgaactaaaaaatatcataaaaagactctaaaaatgtggaatgagagactgtcatca 14420864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 5540923 - 5540996
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5540923 tgcttatgcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacaaactgtcatcac 5540996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 45156755 - 45156918
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttctannnnnnnnnnnnn----gttgcttaagc 112  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||||||||                 | |||| ||||    
T  45156755 tcatcctgtgctccaaatcgtgacacattttcaacaatcgtgacacgattgtgctttcttcaaaatcttctatttttcttgcttttcttgctgctaaagc 45156854  T
Q  113 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||    
T  45156855 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatagaatgataaactgtcatca 45156918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 5981150 - 5981221
Alignment:
Q  106 cttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  5981150 cttaaacttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacggactgtcatcac 5981221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 460119 - 460214
Alignment:
Q  260 taataatgcactattaaactccctaattctcctcacccc-aaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttatttt 354  Q
    ||||||||||  ||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||  |||||||||||||| | ||||||    
T  460119 taataatgcataattaaactccctaattctccttacccccaaaccaccaacctccttactcaaacatacagatttccagtcaacccatgatatttt 460214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 12582290 - 12582240
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12582290 tgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 12582240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 18826760 - 18826834
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| ||||| |||||||||||||||||| |||||||||||||||||||||||    |||||| |||||||||||    
T  18826760 gttgtttaagtttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 18826834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 25228080 - 25228016
Alignment:
Q  110 agcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||| |||| |||||||||||||    
T  25228080 agcttgcttgtgaactcaaaaatatcat-aaaagactctaaaattgtgcaatg-cagactgtcatca 25228016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 354
Target Start/End: Complemental strand, 16839420 - 16839268
Alignment:
Q  203 caacaccctataccacaaactctccttttcagtcaacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcacccc-aaa 301  Q
    ||||||| || |||||||||||||| | ||  |||||| ||||||||| ||| | |  | ||| ||  |||||||||| ||||||||||| ||||| |||    
T  16839420 caacaccttaaaccacaaactctccctctccatcaacatccgccaacatcacttaccaagtaaagcgatattaaactctctaattctccttacccccaaa 16839321  T
Q  302 ccaccaacctcctttctcaaacaaacaggattccagtcaacccaagttatttt 354  Q
    |||||||||||||| |||   ||||||| |||||| || ||||||| ||||||    
T  16839320 ccaccaacctccttactcctgcaaacagtattccattccacccaagatatttt 16839268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 25592336 - 25592400
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaa 81  Q
    ||||| ||| |||||||||| || |||||||||||||||||||||| ||||| ||||||||||||    
T  25592336 tcatcatgtgctccaaatcgggacacattttcaacaatcgtgacacgattttgctttcttcaaaa 25592400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 25595521 - 25595585
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaa 81  Q
    ||||| ||| ||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||    
T  25595521 tcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaa 25595585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 5540832 - 5540903
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| || |||||||||| || ||||||||||||||||||  ||||| ||| |||||||||||||||    
T  5540832 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacatgattttgcttccttcaaaatcttcta 5540903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 18722151 - 18722210
Alignment:
Q  22 ctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaa 81  Q
    |||| ||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||    
T  18722151 ctgtgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaa 18722210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 43682634 - 43682705
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    |||||||||  ||||||| |||| || ||||||| ||||||||||| ||||| |||||||||||||||||||    
T  43682634 tcatcctgtgttccaaattgtgacacgttttcaataatcgtgacacgattttgctttcttcaaaatcttcta 43682705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 10663164 - 10663103
Alignment:
Q  27 ctccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| ||| |  ||||||||||||||||||| ||||| |||||||||||||||||||    
T  10663164 ctccaaatcatgacatgttttcaacaatcgtgacacgattttgctttcttcaaaatcttcta 10663103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 33878089 - 33878146
Alignment:
Q  31 aaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    |||| |||| || ||||||||||||||||||| ||||| |||||||||||||||||||    
T  33878089 aaattgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttcta 33878146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 19792990 - 19792926
Alignment:
Q  113 ttgcttgtgaactcaaaaatatcata-aaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||| ||||||||||||||||   ||||| | |||||||||||    
T  19792990 ttgcttgtgaactcaaaaatatcataaaaaagactctaaaaatagtgaatggccgactgtcatca 19792926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 30640579 - 30640541
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaa 142  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  30640579 tgcttaagcttgcttgtgaactcaaaagtatcataaaaa 30640541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 10663075 - 10663008
Alignment:
Q  112 cttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcacct 179  Q
    ||||||||||||||||| | |||||| |||||||||||||||||   ||||||| ||||||||||||||    
T  10663075 cttgcttgtgaactcaaca-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcacct 10663008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 25228175 - 25228106
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||| ||| ||||||||||||| || |||||| |||||| ||||| |||||  ||||||||||||||||||    
T  25228175 tcatcatgtgctccaaatcgtgacacgttttcagcaatcgagacacgatttt--tttcttcaaaatcttcta 25228106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 12332423 - 12332459
Alignment:
Q  181 cctcctcaccatatttcgcaaccaacaccctatacca 217  Q
    |||||||||||||| |||| |||||||||||||||||    
T  12332423 cctcctcaccatatctcgccaccaacaccctatacca 12332459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 17858205 - 17858153
Alignment:
Q  295 ccccaaaccaccaacctcctttctcaaacaaacaggattccagtcaacccaag 347  Q
    |||||||||||||||||||||  ||| ||||| ||  ||||||||||||||||    
T  17858205 ccccaaaccaccaacctccttattcatacaaatagagttccagtcaacccaag 17858153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 22174817 - 22174857
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaa 142  Q
    |||| ||||||||||||||||||||||||| ||||| ||||    
T  22174817 gttgtttaagcttgcttgtgaactcaaaaacatcatgaaaa 22174857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 22223291 - 22223331
Alignment:
Q  137 taaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||||| |||||||||  ||||||||||||||||||    
T  22223291 taaaaagactcaaaaaatgtgatatgacagactgtcatcac 22223331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 22229633 - 22229673
Alignment:
Q  137 taaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||||| |||||||||  ||||||||||||||||||    
T  22229633 taaaaagactcaaaaaatgtgatatgacagactgtcatcac 22229673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 4635 - 4563
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  4635 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 4563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 25139971 - 25140040
Alignment:
Q  107 ttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  25139971 ttaagcttacttgtgaactcaaaaatatcataaaaaaactctaaaattgtggaatgactgactgtcatca 25140040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 5665902 - 5665830
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||  |||||||||||    
T  5665902 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgattgactgtcatca 5665830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 10600023 - 10599951
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||| |||||||||||    
T  10600023 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagattctaaaaatagtgaatgactgactgtcatca 10599951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 43722976 - 43722904
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||  |||||||||||    
T  43722976 tgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatca 43722904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 25869998 - 25869927
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| ||||||||||||| || ||||| ||||||||||||| ||||| |||||||||||||||||||    
T  25869998 tcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgatttttctttcttcaaaatcttcta 25869927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 36809272 - 36809343
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||| ||| ||||| |||||||||||||    
T  36809272 tcatcctgtgctccaaatcgtgacacgttttcaacaatcgtgacacaaatttgctttcctcaaaatcttcta 36809343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 38014710 - 38014636
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||    |||||| |||||||||||    
T  38014710 gttgtttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 38014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 3874554 - 3874481
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||||   ||||||| ||||||||||||    
T  3874554 tgcttaatcttgtttgtgaactcaaaaatatcctaaaaagactctaaaaataatgaatgactgactgtcatcac 3874481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 13972741 - 13972814
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||   ||||||  ||||||||||||    
T  13972741 tgcttaatcttgtttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatcac 13972814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 5105023 - 5104953
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||| || ||||||| |||||||||||    
T  5105023 tgcttaatcttgcttgtgaactcaaaaatatcataaaaaaactctaaaaa-gt-gaatgactgactgtcatca 5104953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 31430564 - 31430616
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  31430564 gttgtttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaat 31430616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 25873366 - 25873295
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| ||||||||| ||| || ||||| ||||||||||||| ||||| |||||||||||||||||||    
T  25873366 tcatcctgtgctccaaatcatgacacgttttcgacaatcgtgacacgatttttctttcttcaaaatcttcta 25873295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 26358835 - 26358764
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| ||||||||||||  || ||||||||||||||||||| ||||| |||||||| ||||||||||    
T  26358835 tcatcctgtgctccaaatcgtgccacgttttcaacaatcgtgacacgattttgctttcttcgaaatcttcta 26358764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 38006123 - 38006194
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||| ||||||||||||| || ||||| |||||||| |||| ||||| |||||||||||||||||||    
T  38006123 tcatcctgtgctccaaatcgtgacacgttttcgacaatcgtcacacgattttgctttcttcaaaatcttcta 38006194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 346
Target Start/End: Original strand, 21579667 - 21579769
Alignment:
Q  245 ccaacaccacattcttaataatgcactattaaactccctaattctcctcaccc-caaaccaccaacctcctttctcaaacaaacaggattccagtcaacc 343  Q
    |||||||||| | | |||||| |||||||||||||||||||||||||| |||| |||||||||||||| ||  |||  |||||||| || ||| ||||||    
T  21579667 ccaacaccacttccctaataaagcactattaaactccctaattctccttaccctcaaaccaccaaccttctgactccgacaaacagaatgccaatcaacc 21579766  T
Q  344 caa 346  Q
    |||    
T  21579767 caa 21579769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 16788462 - 16788386
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcacct 179  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |||||||||    |||||| ||||||||||||||    
T  16788462 gttgcttaagcttgcttgtgaactcaaaattatcat-aaaagattctaaaaatagcaaatgactgactgtcatcacct 16788386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 6826046 - 6825974
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||| ||   ||||||  |||||||||||    
T  6826046 tgcttaatcttgcttgtgaactcaaaaatatcataaaaagactttaaatataacgaatgattgactgtcatca 6825974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 25139877 - 25139948
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||| ||| ||||||||||||| || || |||||||||||||||| ||||| |||||||| ||||||||||    
T  25139877 tcatcttgtgctccaaatcgtgacacgttgtcaacaatcgtgacacgattttgctttcttcgaaatcttcta 25139948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 13136834 - 13136784
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 154  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||||||||||    
T  13136834 tgcttaatcttgtttgtgaactcaaaaatatcataaaatgactctaaaaat 13136784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 30275538 - 30275599
Alignment:
Q  27 ctccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||||||| || ||||||||||||||||||| | ||| ||||| |||||||||||||    
T  30275538 ctccaaatcgtgacacgttttcaacaatcgtgacacgaatttgctttcctcaaaatcttcta 30275599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 25821754 - 25821818
Alignment:
Q  17 tcatcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaa 81  Q
    |||||||||  |||||||||||| || |||||||||||| |||||| ||||| ||||||||||||    
T  25821754 tcatcctgtgttccaaatcgtgacaccttttcaacaatcttgacacgattttgctttcttcaaaa 25821818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 25873277 - 25873202
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||| |||| ||||||||||||||||||| |||||| |||||||||||||||||   ||||||| ||||||||||||    
T  25873277 gttgtttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcac 25873202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 20947161 - 20947116
Alignment:
Q  271 tattaaactccctaattctcctca-ccccaaaccaccaacctcctt 315  Q
    |||||||||||||||||||||| | |||||||||||||||||||||    
T  20947161 tattaaactccctaattctccttacccccaaaccaccaacctcctt 20947116  T

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Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 16788550 - 16788483
Alignment:
Q  18 catcctgtactccaaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatctt 85  Q
    |||||||  ||| ||||||||| || ||||||||||||||||||| ||| | ||||| ||||||||||    
T  16788550 catcctgcgctctaaatcgtgacacgttttcaacaatcgtgacacgattgtgctttcatcaaaatctt 16788483  T

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Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 25869909 - 25869835
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    |||| |||| ||| ||||||||||||||| |||||| |||||||||||||||||   ||||||| |||||||||||    
T  25869909 gttgtttaaactttcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 25869835  T

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Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 26146790 - 26146832
Alignment:
Q  181 cctcctcaccatatttcgcaaccaacaccctataccacaaact 223  Q
    ||||||| |||||| |||| |||||||||||||||||||||||    
T  26146790 cctcctcgccatatctcgccaccaacaccctataccacaaact 26146832  T

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Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 43310834 - 43310876
Alignment:
Q  181 cctcctcaccatatttcgcaaccaacaccctataccacaaact 223  Q
    ||||||| |||||| |||| |||||||||||||||||||||||    
T  43310834 cctcctcgccatatctcgccaccaacaccctataccacaaact 43310876  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 11059069 - 11059029
Alignment:
Q  137 taaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    |||||||||||||||||||||  ||||| ||||||||||||    
T  11059069 taaaaagactctaaaaatgtgatatgacggactgtcatcac 11059029  T

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Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 12807625 - 12807581
Alignment:
Q  272 attaaactccctaattctcctcacccc-aaaccaccaacctcctt 315  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||    
T  12807625 attaaactccctaattctcataacccctaaaccaccaacctcctt 12807581  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 15466298 - 15466262
Alignment:
Q  52 aatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  15466298 aatcgtgacacgattttgctttcttcaaaatcttcta 15466262  T

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Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 40430010 - 40430062
Alignment:
Q  202 ccaacaccctataccacaaactctccttttcagtcaacacccgccaacaccac 254  Q
    ||||||||||| |||||||||| ||| | ||  ||||||||||||||||||||    
T  40430010 ccaacaccctaaaccacaaactatccctatccatcaacacccgccaacaccac 40430062  T

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Target: scaffold1993 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 1117 - 1045
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 176  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||    
T  1117 tgcttaagcttccttatgaactccaaaatatcataaaaagactctaaaaatgtgaaatgactgactgtcatca 1045  T

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Target: scaffold0520 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 4808 - 4881
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||    
T  4808 tgcttaatcttgtttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatcac 4881  T

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Target: scaffold0270 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 988 - 1061
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |   ||||||| ||||||||||||    
T  988 tgcttaagcttgcttgtgaactcaaaaatatcataaaaatactctaaaagtagcgaatgactgactgtcatcac 1061  T

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Target: scaffold0270; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 4348 - 4396
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaa 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4348 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaa 4396  T

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Target: scaffold0270; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 11478 - 11526
Alignment:
Q  104 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaa 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11478 tgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaa 11526  T

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Target: scaffold0381 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 6479 - 6555
Alignment:
Q  102 gttgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcac 177  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||   ||||||| ||||||||||||    
T  6479 gttgcttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatcac 6555  T

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Target: scaffold0233 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 345
Target Start/End: Complemental strand, 11058 - 10948
Alignment:
Q  236 caacacccgccaacaccacattcttaataatgcactattaaactccctaattctcctcac-cccaaaccaccaacctcctttctcaaacaaacaggattc 334  Q
    ||||| ||||||||||||| | | |||||| ||| |||| ||| ||||||||||||| || |||||||||||||||||||| |||  ||| ||||  |||    
T  11058 caacaaccgccaacaccacttccctaataaagcaatattgaacaccctaattctcctaacacccaaaccaccaacctccttactccgacagacagtgttc 10959  T
Q  335 cagtcaaccca 345  Q
    || ||||||||    
T  10958 caatcaaccca 10948  T

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Target: scaffold0035 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 61747 - 61689
Alignment:
Q  30 caaatcgtgatacattttcaacaatcgtgacacaattttactttcttcaaaatcttcta 88  Q
    |||||||||| || ||||| ||||||||||||| ||||| ||||||| |||||||||||    
T  61747 caaatcgtgacacgttttcgacaatcgtgacacgattttgctttctttaaaatcttcta 61689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 5628 - 5576
Alignment:
Q  202 ccaacaccctataccacaaactctccttttcagtcaacacccgccaacaccac 254  Q
    ||||||||||| |||||||||||||||| ||   |||||||||||||||||||    
T  5628 ccaacaccctaaaccacaaactctccttctccaccaacacccgccaacaccac 5576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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