View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17956_low_13 (Length: 397)
Name: NF17956_low_13
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17956_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 3 - 379
Target Start/End: Original strand, 54683659 - 54684035
Alignment:
| Q |
3 |
gtcccctctgatttctgannnnnnncgctttatgcaacttacaagcaagctctgatattctccaacttactgcagctagctagctacaaccttttacgac |
102 |
Q |
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| T |
54683659 |
gtcccctctgatttctgatttttttcgctttatgcaacttacaagcaagctctgatattctccaacttactgcagctagctagctacaaccttttacgac |
54683758 |
T |
|
| Q |
103 |
ttcttgtgttgttgtgagacccccaaggttctaattttgtgttggttaggacttaggattcattttttgtgttgctatatgatttcatacaaactaatat |
202 |
Q |
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| T |
54683759 |
ttcttgtgttgttgtgagacccccaaggttctaattttgtgttggttaggacttaggattcattttttgtgttgctatatgatttcatacaaactaatat |
54683858 |
T |
|
| Q |
203 |
atgcatatattatgtccatattcatgtaatatggtatagcaaaatgataaacatgaatgtggaattttatttgatataacaatcttctatatagtaagat |
302 |
Q |
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| T |
54683859 |
atgcatatattatgtccatattcatgtaatatggtatagcaaaatgataaacatgaatgtggaattttatttgatataacaatcttctatatagtaagat |
54683958 |
T |
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| Q |
303 |
tgacaatttttgtgttggattgggcaatacatggtttcactctgattctccattagtaaatagtaagattactggta |
379 |
Q |
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| T |
54683959 |
tgacaatttttgtgttggattgggcaatacatggtttcactctgattctccattagtaaatagtaagattactggta |
54684035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 28 - 379
Target Start/End: Complemental strand, 37167511 - 37167165
Alignment:
| Q |
28 |
cgctttatgcaacttacaagcaagctctgatattctccaacttactgcagctagctagctacaaccttttacgacttcttgtgttgttgtgagaccccca |
127 |
Q |
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| T |
37167511 |
cgctttatgtaatttacaagcaagctctgatattctccaacttactgcagctagctagctacaaccttttacgacttcttgtgttgttgtgagacctg-- |
37167414 |
T |
|
| Q |
128 |
aggttctaattttgtgttggttaggacttaggattcattttttgtgttgctatatgatttcatacaaactaatatatgcatatattatgtccatattcat |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37167413 |
-ggttctaattttgtgttggttaggacttaggattcattttttgtgttgctatatgatttcatacaaactaatatatgcatatattatgtccatattcat |
37167315 |
T |
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| Q |
228 |
gtaatatggtatagcaaaatgataaacatgaatgtggaattttatttgatataacaatcttctatatagtaagattgacaatttttgtgttggattgggc |
327 |
Q |
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| T |
37167314 |
gtaat--ggtatagcaaaatgataaacatgaatgtggaattttatttgatataacaatcttctatatagtaagattgacaatttttgtgttggattgggc |
37167217 |
T |
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| Q |
328 |
aatacatggtttcactctgattctccattagtaaatagtaagattactggta |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37167216 |
aatacatggtttcactctgattctccattagtaaatagtaagattactggta |
37167165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 37575236 - 37575362
Alignment:
| Q |
97 |
tacgacttcttgt--gttgttgtgagacccccaaggttctaattttgtgttggttaggacttaggattcattttttgtgttgctatatgatttcatacaa |
194 |
Q |
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||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| |||||||||| |
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| T |
37575236 |
tacgacttcttgtatgttgttgtgggacccccaaggctctaattttgtgtcggttag-------gattcatttttggtgttgctatatgctttcatacaa |
37575328 |
T |
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| Q |
195 |
actaatatatgcatatattatgtccatattcatgta |
230 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
37575329 |
actaatatatgc--atattatgtccatattcatgta |
37575362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 8212955 - 8213022
Alignment:
| Q |
211 |
attatgtccatattcatgtaatatggtat-agcaaaatgataaacatgaatgtggaattttatttgata |
278 |
Q |
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||||||||||||| ||||||| ||| ||| |||||||||||||| ||||| |||||| ||||||||||| |
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| T |
8212955 |
attatgtccatatccatgtaa-atgctattagcaaaatgataaagatgaacgtggaactttatttgata |
8213022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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