View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17956_low_15 (Length: 342)
Name: NF17956_low_15
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17956_low_15 |
 | |
|
| [»] scaffold0640 (1 HSPs) |
| |
|
| [»] scaffold2156 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0640 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 4864 - 5205
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4864 |
aatctttgtattctagaacttgagtttttgagttacttggatttgagctacaatgattttgacgttataagagttccaatcactcaacacaacatcacac |
4963 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4964 |
gttcatctaaacttgtctaccttgacttagcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
5063 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagttactgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5064 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaactggcttcaagcagtaagtacccttccttcactattagaattacaactgagttactgt |
5163 |
T |
|
| Q |
301 |
aaactaaacaacttcatgatcaaaccatctattgagtctttc |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5164 |
aaactaaacaacttcatgatcaaaccatctattgagtatttc |
5205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: scaffold2156
Description:
Target: scaffold2156; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 466 - 126
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
466 |
aatctttgtattctagaacttgagtttttgagttacttggatttgagctacaatgattttgacgttataagagttccaatcactcaacacaacatcacac |
367 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
366 |
gttcatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatcctt-aa |
268 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagttactgt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
267 |
atatctcatccttattgggattgatcttcgtaaggaaaccaactggcttcaagcagtaagtacctttccttcactattagaattacaactgagttactgt |
168 |
T |
|
| Q |
301 |
aaactaaacaacttcatgatcaaaccatctattgagtctttc |
342 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
167 |
aaactaaacaacttcatgatcaatccatctattgagtatttc |
126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 24493942 - 24493635
Alignment:
| Q |
13 |
ctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtttatctaaac |
112 |
Q |
| |
|
|||||||||||| || | ||||||||||| |||||| | || |||||||| | ||||| ||||| || |||| |||||||||||| || |||||||| |
|
|
| T |
24493942 |
ctagaacttgagtttcttagttacttggacttgagcgataacgattttgatttgataagtattccaaccattcaaaacaacatcacacattcatctaaac |
24493843 |
T |
|
| Q |
113 |
ttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatcct |
212 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| || ||||||| || ||||||||||||| ||| |
|
|
| T |
24493842 |
ttgtctaccttgacttatcccccctcagctttggta---ctcttcacatggataatcttcattggcttcctccactttcttcgttgaaatatctcaacct |
24493746 |
T |
|
| Q |
213 |
tagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagttactgtaaactaaacaac |
312 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||||||||||| ||| ||| ||||||||||| |||||||||| ||| | | ||||| ||||||||| |
|
|
| T |
24493745 |
tagtggaatcgatcttcgtgaggaaaccaattggcttcaagaagtggctacacttccttcactattagaattacgtatgattgattgtaacctaaacaac |
24493646 |
T |
|
| Q |
313 |
ttcatgatcaa |
323 |
Q |
| |
|
||||||||||| |
|
|
| T |
24493645 |
ttcatgatcaa |
24493635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 17941208 - 17941493
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||| ||||||||| || | ||||| ||||||||||| | ||| | ||||| || |||||| ||||| || ||||||||||||||||| |
|
|
| T |
17941208 |
aatctttgtattcttgaacttgagtttctcagttatttggatttgagtgataataaatttgatgtgataagaattccatccattcaacacaacatcacac |
17941307 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| |||||||||||| ||||| |||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||| || |||| ||||||| |
|
|
| T |
17941308 |
attcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttcacatggataatcttcattggctttctccattttctaccttgaa |
17941407 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattac |
286 |
Q |
| |
|
||||||| ||||||||| |||||||||| | ||||||| ||||||||||||||||| | ||| ||||||||||| ||||| |||| |
|
|
| T |
17941408 |
atatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagtgaatacacttccttcactattagagttac |
17941493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 18143712 - 18144030
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||||||||||||||| | |||||||||||| | |||||| ||||| || ||||||||||||||||| |
|
|
| T |
18143712 |
aatctttgtattctagaacttgagtttcttagttacttggatttgagattcaatgattttgatatgataagaattccatccattcaacacaacatcacac |
18143811 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||| | | || || ||| | |||||||||||| ||||||||||| ||||||| ||||| || |
|
|
| T |
18143812 |
attcctctaaacttgtctaccttgacttatcctacagctttgtt------actggt---atggataatcttgattggctttctccactttcttccttaaa |
18143902 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagttactgt |
300 |
Q |
| |
|
|||||||| ||| ||||| |||||||||| |||||||||||||||||||||| ||| | ||| ||||||||||| ||||||||||| |||||| ||| |
|
|
| T |
18143903 |
atatctcaacctcagtggaattgatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcactattagaattacagttgagttcttgt |
18144002 |
T |
|
| Q |
301 |
aaactaaacaacttcatgatcaaaccat |
328 |
Q |
| |
|
|| || |||||||| |||||||| |||| |
|
|
| T |
18144003 |
aacctgaacaacttaatgatcaacccat |
18144030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 18115429 - 18115749
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||||||||||||||||| ||||||||||| || |||||| ||||| || |||||||||| |||||| |
|
|
| T |
18115429 |
aatctttgtattctagaacttgagtttctcagttacttggatttgagctcaaatgattttgatgtgataagatttccatccattcaacacaacctcacac |
18115528 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaa------ctcttcacatggataatcttcattggctttcttcactttcatc |
194 |
Q |
| |
|
|| |||||| ||| || ||||||||||||||||| || || | || | |||||||||||||||||||| |||||||||| ||| ||| || |
|
|
| T |
18115529 |
attcatctaaccttttccaccttgacttatcccccttccgttatcatgatcacggtcctcttcacatggataatcttggttggctttctccacattcttc |
18115628 |
T |
|
| Q |
195 |
cttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagt |
294 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||||| ||| | ||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
18115629 |
cttgaaatatctcgaccttagtggaattcatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcactattagaattacagttgagt |
18115728 |
T |
|
| Q |
295 |
tactgtaaactaaacaacttc |
315 |
Q |
| |
|
| ||||| || ||||||||| |
|
|
| T |
18115729 |
cattgtaacctgaacaacttc |
18115749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 18102906 - 18103214
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||| | ||||||| || | | ||||||||||||||||| ||| ||||||| || |||||| ||||| || ||||||||||||||||| |
|
|
| T |
18102906 |
aatctttgtattcttggacttgagtttctcaattacttggatttgagctggaatcattttgatgtgataagaattccatccattcaacacaacatcacac |
18103005 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||| | | | | | ||| |||||||||| |||||| ||||||||| ||||||| ||||| || |
|
|
| T |
18103006 |
attcatctaaacttgtctaccttgacttatcctacaactatcct------attctgcacatggatagtcttcactggctttctccactttcttccttaaa |
18103099 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagttactgt |
300 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||||| ||| |||||| ||||||||| ||||||||| | ||||||||||| ||||||| ||| |
|
|
| T |
18103100 |
atatctcaaccttagttggattgatcttcataaggaaaccaactggtttcaagtagtaagtacacttccttcattgttagaattacagttgagttattgt |
18103199 |
T |
|
| Q |
301 |
aaactaaacaacttc |
315 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
18103200 |
aacctgaacaacttc |
18103214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 19460996 - 19461288
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||||||||||||||| ||||| ||||| || |||||| ||||| || ||||||||||||||||| |
|
|
| T |
19460996 |
aatctttgtattctagaacttgagtttctcagttacttggatttgagtctgaatgaatttgatgtgataagatttccatccattcaacacaacatcacac |
19461095 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaa------ctcttcacatggataatcttcattggctttcttcactttcatc |
194 |
Q |
| |
|
|| |||||| ||| |||||||||||||||||||| || || | || | |||||||||||||||||||| |||||||||| ||| ||| || |
|
|
| T |
19461096 |
attcatctaaccttttctaccttgacttatcccccttccgttatcatgatcacggtcctcttcacatggataatcttggttggctttctccacattcttc |
19461195 |
T |
|
| Q |
195 |
cttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattaca |
287 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||||| ||| | ||| ||||||||||| ||||||||||| |
|
|
| T |
19461196 |
cttgaaatatctcgaccttagtggaattcatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcactattagaattaca |
19461288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 19392601 - 19392946
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
||||||||||||||| |||||||| || | |||||||||||||||||| |||||||||||||| |||||| |||||| || ||||| ||||||||| | |
|
|
| T |
19392601 |
aatctttgtattctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgc |
19392700 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatccccc--ctcat----tt---ttgataaaactcttcacatggataatcttcattggctttcttcactttc |
191 |
Q |
| |
|
|| ||||||||||| |||||||||||||||| | |||| || | | ||| | |||| ||||||| |||| ||||||||||| ||||||| |
|
|
| T |
19392701 |
attcatctaaacttgcctaccttgacttatcctacagctcagccggttccgtggttaatggttttcaaatggatagtcttgattggctttctccactttc |
19392800 |
T |
|
| Q |
192 |
atccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactg |
291 |
Q |
| |
|
|| |||||||||||| |||| ||||| |||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||| | |
|
|
| T |
19392801 |
ttcattgaaatatctcttcctaagtggaattgatcttcataaggaaaccaattggcttcaagcagtgagtatactttcttcactgttagaattacaatta |
19392900 |
T |
|
| Q |
292 |
agttactgtaaactaaacaacttcatgatcaaaccatctattgagt |
337 |
Q |
| |
|
||| | ||||| || | ||||||| |||||| |||||| |||||| |
|
|
| T |
19392901 |
agtgaatgtaacctcgaaaacttcaagatcaagccatcttttgagt |
19392946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 337
Target Start/End: Complemental strand, 14896924 - 14896593
Alignment:
| Q |
3 |
tctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgt |
102 |
Q |
| |
|
|||||||||||| ||||| ||| || | |||||||| |||||||| ||| ||||||| || ||||| ||||||||||||||||||||||||||| | |
|
|
| T |
14896924 |
tctttgtattctcgaactggagtttctcagttacttagatttgagtatgaatcattttgatgtgataagtattccagtcactcaacacaacatcacacat |
14896825 |
T |
|
| Q |
103 |
ttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaat |
202 |
Q |
| |
|
| ||||| ||| ||||||||||||||||| | | | ||| ||| ||||||||||||||| ||||||||||| ||| ||| |||||||||| |
|
|
| T |
14896824 |
tcatctagccttttctaccttgacttatccttcaacgaaggtcctaa---tctgcacatggataatcttgattggctttctccacattcttccttgaaat |
14896728 |
T |
|
| Q |
203 |
atctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagttactgtaa |
302 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| ||||||||||||||| ||| ||||| ||||| ||||| |||||| ||||| ||| | | || || |
|
|
| T |
14896727 |
atctcatccttagtggaattgatcttcacaaggaatccaattggcttcaagtagtgagtacacttccctcactattagaactacaattgactgattgcaa |
14896628 |
T |
|
| Q |
303 |
actaaacaacttcatgatcaaaccatctattgagt |
337 |
Q |
| |
|
||| |||||||||||| |||| ||||| |||||| |
|
|
| T |
14896627 |
actgaacaacttcatgttcaactcatcttttgagt |
14896593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 18164626 - 18164933
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | ||| ||||||||||||| ||||||||||| || |||||| || || | |||||||||| |||||| |
|
|
| T |
18164626 |
aatctttgtattctagaacttgagtttctcagtcacttggatttgagtcttaatgattttgatgtgataagaattacatcaattcaacacaacttcacac |
18164725 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||| | | | || ||| | |||||||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
18164726 |
attcatctaaacttgtctaccttgacttatccaacagcttaatt------actagt---atggataatcttgattggctttctccactttcttccttgaa |
18164816 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagttactgt |
300 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||| ||||| | || |
|
|
| T |
18164817 |
atatctcaaccttagttttattgatcttcataaggaaaccaattggattcaagcagtgagtacacttccttcactattagaattacagttgagtaattgc |
18164916 |
T |
|
| Q |
301 |
aaactaaacaacttcat |
317 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
18164917 |
aacctgaacaacttcat |
18164933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 17728216 - 17727883
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||| ||||||||| || | ||||||||||||||||||| |||| | ||||| | |||||| ||||| || ||| ||||||||||||| |
|
|
| T |
17728216 |
aatctttgtattcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcatcacaacatcacac |
17728117 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
||| ||| || ||| | ||| |||||||||| | | | | | |||||| |||||||||| |||||||||||||||| ||||||| ||||| | |
|
|
| T |
17728116 |
gttcatcgaaccttttgtacactgacttatcct---taaatcaaggtccaactctgcacatggatagtcttcattggctttctccactttcttccttaca |
17728020 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagttactgt |
300 |
Q |
| |
|
|||||||| ||| | ||| |||||||||| ||||||||| ||||||||||||| | | | ||| ||||||||||| ||||||||||| ||||| || |
|
|
| T |
17728019 |
atatctcaacctcaatggaattgatcttcataaggaaacaaattggcttcaagtattgaatacacttccttcactgttagaattacagttgagtgggtgc |
17727920 |
T |
|
| Q |
301 |
aaactaaacaacttcatgatcaaaccatctattgagt |
337 |
Q |
| |
|
|| |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
17727919 |
aacctaaacaacttcctgatcaatccatctattgagt |
17727883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 19029445 - 19029112
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||| ||||||||| || | ||||||||||||||||||| |||| | ||||| | |||||| ||||| || ||| ||||||||||||| |
|
|
| T |
19029445 |
aatctttgtattcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcatcacaacatcacac |
19029346 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
||| ||| || ||| | ||| |||||||||| | | | | | |||||| |||||||||| |||||||||||||||| ||||||| ||||| | |
|
|
| T |
19029345 |
gttcatcgaaccttttgtacactgacttatcct---taaatcaaggtccaactctgcacatggatagtcttcattggctttctccactttcttccttaca |
19029249 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagttactgt |
300 |
Q |
| |
|
|||||||| ||| | ||| |||||||||| ||||||||| ||||||||||||| | | | ||| ||||||||||| ||||||||||| ||||| || |
|
|
| T |
19029248 |
atatctcaacctcaatggaattgatcttcataaggaaacaaattggcttcaagtattgaatacacttccttcactgttagaattacagttgagtgggtgc |
19029149 |
T |
|
| Q |
301 |
aaactaaacaacttcatgatcaaaccatctattgagt |
337 |
Q |
| |
|
|| |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
19029148 |
aacctaaacaacttcctgatcaatccatctattgagt |
19029112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 285
Target Start/End: Original strand, 18015574 - 18015848
Alignment:
| Q |
5 |
tttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgttt |
104 |
Q |
| |
|
|||||||| |||||||||| || | ||||||||||||||||| | |||||| ||||| || ||||| ||||| || |||| |||||||||||| || |
|
|
| T |
18015574 |
tttgtattttagaacttgaatttcttagttacttggatttgagtttcaatgaatttgatgtgataagtattccatccattcaaaacaacatcacacattc |
18015673 |
T |
|
| Q |
105 |
atctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaatat |
204 |
Q |
| |
|
||||| ||| |||||||||||||| ||||| || |||| |||||||||||||||||||| |||||||||| ||| ||| || ||||||||| |
|
|
| T |
18015674 |
ctctaaccttttctaccttgacttacacccccccactttt------actcttcacatggataatctggattggctttcaccacattcgtcgttgaaatat |
18015767 |
T |
|
| Q |
205 |
ctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaatta |
285 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||||||||||| ||| | | | ||||||||||| ||||||||| |
|
|
| T |
18015768 |
ctcaaccttagttggattgatcttcataaggaaaccaattggcttcaaatagtgaattcacttccttcactattagaatta |
18015848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 16676677 - 16677013
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | | ||||||||||||||||| ||||| |||||| | |||||| ||||| || |||||| ||| |||||| |
|
|
| T |
16676677 |
aatctttgtattctagaacttgagtttctaatttacttggatttgagctggaatgaatttgacctaataagaattccatccattcaacaaaacctcacac |
16676776 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacat------ggataatcttcattggctttcttcactttcatc |
194 |
Q |
| |
|
| |||||| ||||||||||||||||||||| ||||| |||||| ||||||| || |||||||||||||||||||| | |||||| || |
|
|
| T |
16676777 |
atgcatctaaccttgtctaccttgacttatcctccctcggccttgata---ctcttcatataagtatggataatcttcattggctttttatactttcttc |
16676873 |
T |
|
| Q |
195 |
cttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagt |
294 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||| |||||||||||||||| |||| ||| | ||| ||||||||||| |||||||| | ||||| |
|
|
| T |
16676874 |
cttgaagtatctcgaccttagtggacttgatcttcataaggaaaccaattggattcagaaagtgaatacacttccttcactattagaattgcggttgagt |
16676973 |
T |
|
| Q |
295 |
tactgtaaactaaacaacttcatgatcaaaccatctattg |
334 |
Q |
| |
|
| |||||| | |||||||||||| |||| ||||||||| |
|
|
| T |
16676974 |
tcttgtaaattgaacaacttcatgctcaactcatctattg |
16677013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 25462514 - 25462767
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
||||| ||| |||||||||||||| || | |||||||||||||| || | ||||| ||| || | ||||| |||||| | ||||||||||||||||| |
|
|
| T |
25462514 |
aatctatgtgttctagaacttgagtttctcagttacttggatttaagtgataatgaatttaacatcataagtattccagcctttcaacacaacatcacac |
25462613 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| ||||||||||| ||| |||||||||||||| |||| || || ||||||||||||||||||||||||||||||||| || | || ||||| || |
|
|
| T |
25462614 |
attcatctaaacttgactatcttgacttatccccgctcaccctt---aacactcttcacatggataatcttcattggctttctccattatcttccttaaa |
25462710 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagt |
257 |
Q |
| |
|
|||||||| ||| | || |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
25462711 |
atatctcaacctcaatgcaattgatcttcataaggaaactaattggcttcaagcagt |
25462767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 19333461 - 19333793
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||||||||||||||| |||| |||||||| |||| | ||||| || || |||||||||||||| |
|
|
| T |
19333461 |
aatctttgtattctagaacttgagtttctcagttacttggatttgagtctgaatgtatttgacgtgataataattccatccattccacacaacatcacac |
19333560 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctca------tttttgat------------aaaactcttcacatggataatcttcattggctttc |
182 |
Q |
| |
|
|| |||||||||||| |||||||||||||||| ||||| || | ||| |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
19333561 |
attcatctaaacttgtataccttgacttatccctcctcaacaaatttgtcgatttagaaaaaaagaaaactctgcacatggatagtcttcattggctttc |
19333660 |
T |
|
| Q |
183 |
ttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaa |
282 |
Q |
| |
|
||||||||| ||||| |||||||||| ||||||| |||||||||| |||||||||||||| | ||||| ||| | | | ||||||||||| |||||| |
|
|
| T |
19333661 |
ttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatagtgaattcacttccttcactattagaa |
19333760 |
T |
|
| Q |
283 |
ttacaactgagttactgtaaactaaacaacttc |
315 |
Q |
| |
|
||||| ||||| | |||||| | ||||||||| |
|
|
| T |
19333761 |
ttacagttgagtgattgtaaattgaacaacttc |
19333793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 18022272 - 18022599
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||| ||||||||| || | ||||| ||||||||||| | ||||| ||||| || |||||| ||||| | ||||||||||||||||| |
|
|
| T |
18022272 |
aatctttgtattcttgaacttgagtttcttagttatttggatttgagtcataatgaatttgatgtgataagaattccatctattcaacacaacatcacac |
18022371 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
| ||||||| || ||||||||||||||||| ||| || | ||||||||| ||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
18022372 |
actcatctaaatttttctaccttgacttatcc---------tttaatgatggtcttcacatagataatcttgactggctttcttcactttcttccttgaa |
18022462 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagttactgt |
300 |
Q |
| |
|
||||||| ||| ||||| ||||||||| |||||||||||| ||| |||||| | | | | | ||||||||||| ||| ||||||| |||| | ||| |
|
|
| T |
18022463 |
atatctcgacctcagtggacttgatcttcataaggaaaccaactggtttcaagtaatcaattcacttccttcactattacaattacagttgagcgattgt |
18022562 |
T |
|
| Q |
301 |
aaactaaacaacttcatgatcaaaccatctattgagt |
337 |
Q |
| |
|
||| | || | |||||||||||| ||||||||||||| |
|
|
| T |
18022563 |
aaattgaatagcttcatgatcaacccatctattgagt |
18022599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 19413666 - 19413968
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||||||||||| ||||| |||||| | |||||| ||||| | | ||||||| ||||||| |
|
|
| T |
19413666 |
aatctttgtattctagaacttgagtttctcagttacttggatttgagccacaattattttggtgagataagaattccaactattaaacacaatatcacac |
19413765 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| |||||||||||| ||||||||||||| || || || || | | ||| |||||||||||||||||| | ||||||| || ||||| |
|
|
| T |
19413766 |
attcatctaaacttgtttaccttgacttat---cctacagcttagacacta----tca-----ataatcttcattggctttatccactttcttcgttgaa |
19413853 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagttactgt |
300 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||||||||||||| |||| ||| | ||| ||||||||||| ||||||||||| ||||| | ||| |
|
|
| T |
19413854 |
atatctcacccttagttggattgatcttcataaggaaaccaattggcctcaaatagtgaatacacttccttcactattagaattacagatgagtcattgt |
19413953 |
T |
|
| Q |
301 |
aaactaaacaacttc |
315 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
19413954 |
aacctaaataacttc |
19413968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 18146294 - 18146575
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||| ||||||||| || | | ||||||||||||||| | ||| ||||||| | |||||| ||||| || ||||||||| ||||||| |
|
|
| T |
18146294 |
aatctttgtattcttgaacttgagtttcttaattacttggatttgagtgataattattttgatatgataagaattccatccattcaacacaatatcacac |
18146393 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
| ||||||| ||| | ||||||||||||||| | | | | | ||||| |||||| |||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
18146394 |
atatatctaaccttttgtaccttgacttatcct---ttaactacggtcctactctgcacatgcataatcttcattggctttctccactttcttccttgaa |
18146490 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaatta |
285 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||||| ||| |||||| ||||| | | ||||||||||| ||| ||||| |
|
|
| T |
18146491 |
atatctctcccttagtgagattgatcttcacaaggaaaccaactggtttcaagtagtaaattcacttccttcactattaaaatta |
18146575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 19399184 - 19399464
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
||||| |||||||||||||||||| || | ||||||||||||||||| | ||||| ||| | || |||||| ||||| || ||||||||| ||||||| |
|
|
| T |
19399184 |
aatctctgtattctagaacttgagtttctcagttacttggatttgagtgagaatgaatttcatgtgataagaattccatccattcaacacaatatcacac |
19399283 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| |||||||||||| || ||||||| ||| | || | ||||| || |||||||||||| ||||||||||| ||||||| ||||| || |
|
|
| T |
19399284 |
attcatctaaacttgtagactttgacttctcctggaact------atcagactctgcaaatggataatcttgattggctttctccactttcttccttaaa |
19399377 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattaca |
287 |
Q |
| |
|
|||||||| ||||| | |||||||||||| |||||||||||| ||| |||||| ||||||||| ||||| ||| | || |||||||| |
|
|
| T |
19399378 |
atatctcaaccttaattggattgatcttcataaggaaaccaactggtttcaagtagtaagtacacttccgtcattgtttgaattaca |
19399464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 19436344 - 19436624
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
||||||||||||||| |||||||| || | ||||||||||||||||| ||||||||||| || |||||| || || || ||||||||| ||||||| |
|
|
| T |
19436344 |
aatctttgtattctaaaacttgagtttcttagttacttggatttgagtgtgaatgattttgatgtgataagaatttcatccattcaacacaatatcacac |
19436443 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| |||||||||| |||||||||||||||| | | | | | ||| |||||| |||||||| ||||||||||||| ||||| ||||| || |
|
|
| T |
19436444 |
attcatctaaacttctctaccttgacttatcgtacaactatcct------attctgcacatgaataatcttgattggctttcttccctttcttccttaaa |
19436537 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattaca |
287 |
Q |
| |
|
|||||||| ||||| || |||||||||| |||||||||||| ||| |||||||||| | | | ||| ||||||| ||||||||||| |
|
|
| T |
19436538 |
atatctcaaccttactgaaattgatcttcataaggaaaccaactggtttcaagcagtgaattcactttcttcactattagaattaca |
19436624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 155 - 337
Target Start/End: Original strand, 19424231 - 19424413
Alignment:
| Q |
155 |
ttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagc |
254 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || ||| | |||| ||||||||| ||||||||| ||| |||| ||||||| |||||| |
|
|
| T |
19424231 |
ttcacatggataatcttgattggctttcttcactttcttcgttggagaatctttaccttagtggaattgatctttctaaagaaagcaattggattcaagg |
19424330 |
T |
|
| Q |
255 |
agtaagtacccttccttcactcttagaattacaactgagttactgtaaactaaacaacttcatgatcaaaccatctattgagt |
337 |
Q |
| |
|
||| ||||| ||||||||||| ||| |||||||| | ||| | || |||| |||||||||||||||||| ||||| ||||||| |
|
|
| T |
19424331 |
agtcagtacacttccttcactattacaattacaaataagtgattggaaaccaaacaacttcatgatcaacccatcaattgagt |
19424413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 19380369 - 19380677
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||| |||||| || || | ||||||||||||||||| | ||| ||||||| || |||||| ||||| || |||||| ||||| |||| |
|
|
| T |
19380369 |
aatctttgtattcttgaacttaagtttcttagttacttggatttgagtgaaaataattttgatgtgataagaattccatccattcaacaaaacattacac |
19380468 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| ||||| ||| | ||||||||||||||| | || || |||| ||||||||||||||| ||||||||||| ||||||| ||||| || |
|
|
| T |
19380469 |
attcatctatccttttgcaccttgacttatcccac------ttatatggtcctctgcacatggataatcttgattggctttctccactttcttccttaaa |
19380562 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattacaactgagttactgt |
300 |
Q |
| |
|
|||||||| ||| ||| ||| |||||| |||||||| |||||| |||||| ||| | ||| ||||||||||| ||||||||||| ||||| | ||| |
|
|
| T |
19380563 |
atatctcaacctcgatggaatttatcttcataaggaaaataattggtttcaagtagtgaatacacttccttcactattagaattacagttgagtcattgt |
19380662 |
T |
|
| Q |
301 |
aaactaaacaacttc |
315 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
19380663 |
aacctgaacaacttc |
19380677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 19375158 - 19375362
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
||||||| |||||||||||||||| || | ||||||||||||||||| | |||||| |||||||| |||||| |||| || |||||||||| |||||| |
|
|
| T |
19375158 |
aatctttatattctagaacttgagtttctcagttacttggatttgagtttcaatgaatttgacgtgataagaattccgtccattcaacacaacttcacac |
19375257 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| |||||| ||| | | ||||||||||| || ||| | | ||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
19375258 |
attcatctaaccttttgttccttgacttat---ccttcaactacagtcctactctgcacatggataatcttcaatggctttcttcactttcttccttgaa |
19375354 |
T |
|
| Q |
201 |
atatctca |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
19375355 |
atatctca |
19375362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 19350873 - 19351150
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||| |||||| | ||| ||||||| || |||| ||||| || |||| | |||||||||| |
|
|
| T |
19350873 |
aatctttgtattctagaacttgagtttctcagttacttgggtttgagtgagaatcattttgatgtgataactattccatccattcaaaaaaacatcacac |
19350972 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||| | | || | ||| | | ||| |||||||| ||||||||||| ||||||| ||| | || |
|
|
| T |
19350973 |
attcctctaaacttgtctaccttgacttatcctacagc---ttagttaa------tgatatgaataatcttgattggctttctccactttcttccataaa |
19351063 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattaca |
287 |
Q |
| |
|
|||||||| ||| |||| |||||||||| |||||||||||||||||||||| ||| | | | ||||||||||| ||| ||||||| |
|
|
| T |
19351064 |
atatctcaacctcggtggaattgatcttcataaggaaaccaattggcttcaaatagtgaattcacttccttcactgttaaaattaca |
19351150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 18107916 - 18108186
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||||| || |||||| || | ||||| || |||||||||| ||||||||||| || |||||| ||||| || ||||||||| ||||||| |
|
|
| T |
18107916 |
aatctttgtattcttgaccttgagtttctcagttatttagatttgagctggaatgattttgatgtcataagaattccatccattcaacacaatatcacac |
18108015 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| |||||| ||| ||||||||||||| || | ||||||||||||||||| |||||||||||||||| ||| |||||||| |
|
|
| T |
18108016 |
attcatctaacctttcgcaccttgacttatcagccttt-tttttgataaaactctt---------------cattggctttcttcacattcttccttgaa |
18108099 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattaca |
287 |
Q |
| |
|
|||||||| |||| |||| ||||||||| |||||||||||| ||| |||||| ||| | | | ||| ||||||| ||||||||||| |
|
|
| T |
18108100 |
atatctcagccttggtggagttgatcttcataaggaaaccaactggtttcaagtagtgaattcactttcttcactattagaattaca |
18108186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 285
Target Start/End: Original strand, 17949438 - 17949573
Alignment:
| Q |
151 |
actcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttc-gtaaggaaaccaattggctt |
249 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||| ||||| || ||||||| ||| |||| |||||||||| |||||||| |||||| || |
|
|
| T |
17949438 |
actctgcacatggataatcttcattggctttctccactttcttccttaaattatctcaacctcggtggaattgatcttcaataaggaaaataattggttt |
17949537 |
T |
|
| Q |
250 |
caagcagtaagtacccttccttcactcttagaatta |
285 |
Q |
| |
|
|||| ||| | | | ||| ||||||| ||||||||| |
|
|
| T |
17949538 |
caagtagtgaattcactttcttcactattagaatta |
17949573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 19419459 - 19419684
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
|||||||||||| | ||||||||| || | ||||||||||||||||| | ||| | ||| | || |||||| ||||| || ||||||||||||||||| |
|
|
| T |
19419459 |
aatctttgtatttttgaacttgagtttcttagttacttggatttgagtcataataaatttaatgtgataagaattccatccattcaacacaacatcacac |
19419558 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| |||||| ||||| | |||||||||||| ||| ||| ||||||||| |||||||| ||||||||||| ||||||| ||||| || |
|
|
| T |
19419559 |
attcatctaaccttgtgaaacttgacttatcct---tcaacttt---------cttcacatgtataatcttgattggctttctccactttcttccttaaa |
19419646 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaa |
238 |
Q |
| |
|
|||||||| ||| |||| |||||||||| |||||||| |
|
|
| T |
19419647 |
atatctcaacctcggtggaattgatcttcataaggaaa |
19419684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 13667410 - 13667125
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
||||||||||||||||||||| || || | || || ||||||||||| | ||||| ||||| || |||| | || || || |||||||||||||||| |
|
|
| T |
13667410 |
aatctttgtattctagaacttaagtttctcagctatttggatttgagtcataatgaatttgatgtgataaaaatttcatccattcaacacaacatcacaa |
13667311 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaa |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||| || || ||||||||| | ||||||||| ||||||||||||||| ||||| || |||| |||||||| |
|
|
| T |
13667310 |
attcatctaaacttgtctaccttgacttatccgcctacaattttgataatattcttcacattgataatcttcattggttttctccattttcttccttgaa |
13667211 |
T |
|
| Q |
201 |
atatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactcttagaattac |
286 |
Q |
| |
|
||||||| ||| ||| |||||||||| ||||||||| |||||||| |||| ||| | ||| |||||||||| |||||||||| |
|
|
| T |
13667210 |
atatctccggtttaatggcattgatcttcataaggaaactaattggctccaagtagtgaatacacttccttcacaattagaattac |
13667125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 281
Target Start/End: Original strand, 2509634 - 2509754
Alignment:
| Q |
167 |
atcttcattggctttcttcactttcatccttgaaatatctcatcctt------agtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaag |
260 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||||||| |||| ||| |||||||||| |||| ||||||||||| | |||| ||| || |
|
|
| T |
2509634 |
atcttcattggctttctccactttcttccttaaaatatctcaaccttggtttcagtaccattgatcttcataagaaaaccaattgggtacaagtagtgag |
2509733 |
T |
|
| Q |
261 |
tacccttccttcactcttaga |
281 |
Q |
| |
|
||| ||||||||||| ||||| |
|
|
| T |
2509734 |
tacacttccttcactattaga |
2509754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 153 - 315
Target Start/End: Original strand, 15531973 - 15532135
Alignment:
| Q |
153 |
tcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaa |
252 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
15531973 |
tcttcacatggataatcttgattggctttctccactttcatccttgaaatatctcaaccttaattggattgatcttcataaggaaaccaactggattcaa |
15532072 |
T |
|
| Q |
253 |
gcagtaagtacccttccttcactcttagaattacaactgagttactgtaaactaaacaacttc |
315 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| ||| ||||| |||||||||| ||||||||| |
|
|
| T |
15532073 |
gcagagagtacacttccttcactattagatttaaggttgagtgactgtaaactgaacaacttc |
15532135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 156 - 334
Target Start/End: Complemental strand, 2710960 - 2710782
Alignment:
| Q |
156 |
tcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagca |
255 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||||||| || ||||||||||||| ||| || || |||||||||| ||| |||||||||||||||||| | |
|
|
| T |
2710960 |
tcacatagataatcttaattggctttctccactttcttctttgaaatatctcaacctcagcggtattgatcttcataaagaaaccaattggcttcaaata |
2710861 |
T |
|
| Q |
256 |
gtaagtacccttccttcactcttagaattacaactgagttactgtaaactaaacaacttcatgatcaaaccatctattg |
334 |
Q |
| |
|
|| | ||| ||||||||||| |||||| ||||| || || |||||||||| ||||||||||||||| || ||||||| |
|
|
| T |
2710860 |
gtgaatacacttccttcactattagaagtacaattgtctttttgtaaactaagcaacttcatgatcaacccgtctattg |
2710782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 314
Target Start/End: Original strand, 8459103 - 8459253
Alignment:
| Q |
164 |
ataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtac |
263 |
Q |
| |
|
|||||||||| ||||||||| ||||||| ||||| ||| |||||| ||| | ||| |||||||||| ||||||||| ||||||||||||||||| ||| |
|
|
| T |
8459103 |
ataatcttcaatggctttctccactttcttccttaaaaaatctcaacctcaatggaattgatcttcataaggaaactaattggcttcaagcagtggctac |
8459202 |
T |
|
| Q |
264 |
ccttccttcactcttagaattacaactgagttactgtaaactaaacaactt |
314 |
Q |
| |
|
||| |||| || ||||| ||||| | ||| | |||||||| |||||||| |
|
|
| T |
8459203 |
actttcttccctattagagttacacttaagtaagtgtaaactgaacaactt |
8459253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 8458949 - 8459080
Alignment:
| Q |
1 |
aatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacac |
100 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||||||||||||||||| || | ||||| || |||||| ||||| | ||||||||||||||||| |
|
|
| T |
8458949 |
aatctttccattctagaacttgagtttctgagttacttggatttgagcttacataaatttgatgtgataagaattccatcgattcaacacaacatcacac |
8459048 |
T |
|
| Q |
101 |
gtttatctaaacttgtctaccttgacttatcc |
132 |
Q |
| |
|
| |||||| ||| | |||||||||||||| |
|
|
| T |
8459049 |
atgcatctaaccttttgcaccttgacttatcc |
8459080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 335
Target Start/End: Original strand, 16436013 - 16436191
Alignment:
| Q |
157 |
cacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcag |
256 |
Q |
| |
|
||||||||||||||| | ||| ||||| || |||| | | |||||||| | ||| ||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
16436013 |
cacatggataatcttgactgggtttctccattttcttgttgaaaatatctaaacctcagtgggattgatcttaacaaggcaaccaattggcttcaagcaa |
16436112 |
T |
|
| Q |
257 |
taagtacccttccttcactcttagaattacaactgagttactgtaaactaaacaacttcatgatcaaaccatctattga |
335 |
Q |
| |
|
| || |||||||| || |||||||||||| ||| ||| ||||| || | ||||||||||| ||| ||| ||||||| |
|
|
| T |
16436113 |
tggctaagcttccttccctgttagaattacaattgaattattgtaatctgagcaacttcatgaccaacccacctattga |
16436191 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 335
Target Start/End: Complemental strand, 16436795 - 16436621
Alignment:
| Q |
161 |
tggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaag |
260 |
Q |
| |
|
||||||||||| | ||| ||||| || |||| | ||| |||||||||| || ||||| ||||||||| | || | ||||||||||||||||||| | |
|
|
| T |
16436795 |
tggataatcttgactgggtttctacattttcttgcttaaaatatctcaatctcagtggtattgatcttagcaaagcaaccaattggcttcaagcaatggc |
16436696 |
T |
|
| Q |
261 |
tacccttccttcactcttagaattacaactgagttactgtaaactaaacaacttcatgatcaaaccatctattga |
335 |
Q |
| |
|
|| |||||||| || |||||||||||| ||| ||| ||||| || ||||||||||| ||| ||| ||||||| |
|
|
| T |
16436695 |
taagcttccttccctattagaattacaattgaattattgtaatctttgcaacttcatgaccaacccacctattga |
16436621 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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