View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17956_low_16 (Length: 337)

Name: NF17956_low_16
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17956_low_16
NF17956_low_16
[»] chr1 (6 HSPs)
chr1 (127-320)||(47457665-47457858)
chr1 (86-130)||(47458982-47459026)
chr1 (89-128)||(37028789-37028828)
chr1 (97-130)||(43824218-43824251)
chr1 (86-122)||(19563578-19563614)
chr1 (97-129)||(36384395-36384427)
[»] chr2 (3 HSPs)
chr2 (86-129)||(18058989-18059032)
chr2 (86-128)||(39822764-39822806)
chr2 (96-129)||(39822972-39823005)
[»] chr4 (1 HSPs)
chr4 (86-129)||(31799143-31799186)
[»] chr3 (4 HSPs)
chr3 (87-129)||(35637085-35637127)
chr3 (86-128)||(3984657-3984699)
chr3 (90-118)||(2663453-2663481)
chr3 (97-129)||(28212625-28212657)
[»] chr8 (4 HSPs)
chr8 (86-129)||(29525734-29525777)
chr8 (86-129)||(35163218-35163261)
chr8 (86-123)||(27768765-27768802)
chr8 (88-129)||(30233670-30233711)
[»] chr5 (4 HSPs)
chr5 (86-129)||(24147272-24147315)
chr5 (86-129)||(29668384-29668427)
chr5 (86-129)||(38088856-38088899)
chr5 (86-129)||(43146212-43146255)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 127 - 320
Target Start/End: Complemental strand, 47457858 - 47457665
Alignment:
Q  127 ttgatctttcgtgtgacaccatccaaacaagcttcaattctccttttaccatcattcaagcttctaaccaccaccatggaagcaagctaaacaaagacct 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47457858 ttgatctttcgtgtgacaccatccaaacaagcttcaattctccttttaccatcattcaagcttctaaccaccaccatggaagcaagctaaacaaagacct 47457759  T
Q  227 tcacaccaccttccacaatcatatcgaatcaatccaccacaacccgccaatctagtcgtttgcttcaaagcaccatcggtattaaggcaaaaat 320  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47457758 tcacaccaccttccacaatcatctcgaatcaatccaccacaacccgccaatctagtcgtttgcttcaaagcaccatcggtattaaggcaaaaat 47457665  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 47459026 - 47458982
Alignment:
Q  86 gaggtgttagattttaattggttgggtgtaagaatgatgtgttga 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  47459026 gaggtgttagattttaattggttgggtgtaagaatgatgtgttga 47458982  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 37028789 - 37028828
Alignment:
Q  89 gtgttagattttaattggttgggtgtaagaatgatgtgtt 128  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37028789 gtgttagattttaattggttgggtgtaagaatgatgtgtt 37028828  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 43824251 - 43824218
Alignment:
Q  97 ttttaattggttgggtgtaagaatgatgtgttga 130  Q
    |||| |||||||||||||||||||||||||||||    
T  43824251 tttttattggttgggtgtaagaatgatgtgttga 43824218  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 19563578 - 19563614
Alignment:
Q  86 gaggtgttagattttaattggttgggtgtaagaatga 122  Q
    |||||||| |||||||||||||||| |||||||||||    
T  19563578 gaggtgtttgattttaattggttggatgtaagaatga 19563614  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 36384395 - 36384427
Alignment:
Q  97 ttttaattggttgggtgtaagaatgatgtgttg 129  Q
    |||| ||||||||||||||||||||||||||||    
T  36384395 tttttattggttgggtgtaagaatgatgtgttg 36384427  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 18058989 - 18059032
Alignment:
Q  86 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 129  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  18058989 gaggtgtttgattttaattggttgggtgtaagaatgatgtgttg 18059032  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 39822806 - 39822764
Alignment:
Q  86 gaggtgttagattttaattggttgggtgtaagaatgatgtgtt 128  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  39822806 gaggtgtttgattttaattggttgggtgtaagaatgatgtgtt 39822764  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 39822972 - 39823005
Alignment:
Q  96 attttaattggttgggtgtaagaatgatgtgttg 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  39822972 atttttattggttgggtgtaagaatgatgtgttg 39823005  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 31799186 - 31799143
Alignment:
Q  86 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 129  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  31799186 gaggtgttagattttaattggttgggtgtaagaattatatgttg 31799143  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 35637127 - 35637085
Alignment:
Q  87 aggtgttagattttaattggttgggtgtaagaatgatgtgttg 129  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  35637127 aggtgtttgattttaattggttgggtgtaaaaatgatgtgttg 35637085  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 3984657 - 3984699
Alignment:
Q  86 gaggtgttagattttaattggttgggtgtaagaatgatgtgtt 128  Q
    |||||||| |||||||||||||||| | |||||||||||||||    
T  3984657 gaggtgtttgattttaattggttggatttaagaatgatgtgtt 3984699  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 2663453 - 2663481
Alignment:
Q  90 tgttagattttaattggttgggtgtaaga 118  Q
    |||||||||||||||||||||||||||||    
T  2663453 tgttagattttaattggttgggtgtaaga 2663481  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 28212657 - 28212625
Alignment:
Q  97 ttttaattggttgggtgtaagaatgatgtgttg 129  Q
    |||| ||||||||||||||||||||||||||||    
T  28212657 tttttattggttgggtgtaagaatgatgtgttg 28212625  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 29525777 - 29525734
Alignment:
Q  86 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 129  Q
    |||||||| |||||||||| |||||||||||||||| |||||||    
T  29525777 gaggtgtttgattttaattagttgggtgtaagaatgttgtgttg 29525734  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 35163218 - 35163261
Alignment:
Q  86 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 129  Q
    |||||||| ||||||||||| |||| ||||||||||||||||||    
T  35163218 gaggtgtttgattttaattgattggatgtaagaatgatgtgttg 35163261  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 27768802 - 27768765
Alignment:
Q  86 gaggtgttagattttaattggttgggtgtaagaatgat 123  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  27768802 gaggtgtttgattttaattggttggatgtaagaatgat 27768765  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 30233711 - 30233670
Alignment:
Q  88 ggtgttagattttaattggttgggtgtaagaatgatgtgttg 129  Q
    ||||| ||||||||||||||| |||||||||| |||||||||    
T  30233711 ggtgtcagattttaattggttaggtgtaagaaagatgtgttg 30233670  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 24147272 - 24147315
Alignment:
Q  86 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 129  Q
    |||||||| |||||||||||||||||||||||||  ||||||||    
T  24147272 gaggtgtttgattttaattggttgggtgtaagaaatatgtgttg 24147315  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 29668427 - 29668384
Alignment:
Q  86 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 129  Q
    |||||||| |||||||||| |||| |||||||||||||||||||    
T  29668427 gaggtgtttgattttaattagttgagtgtaagaatgatgtgttg 29668384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 38088899 - 38088856
Alignment:
Q  86 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 129  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||    
T  38088899 gaggtgtttgatttcaattggttgggggtaagaatgatgtgttg 38088856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 43146255 - 43146212
Alignment:
Q  86 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 129  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||    
T  43146255 gaggtgtttgattttaattgattgggtgtaagaatgatttgttg 43146212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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