View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17956_low_2 (Length: 589)
Name: NF17956_low_2
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17956_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 52558979 - 52559558
Alignment:
| Q |
1 |
aaggtcgtttcatggtaacatatttttccacagcgattccagaagttagtgtacgtttggattcatggtaagtttgccaaaatcatgatgccaccgttat |
100 |
Q |
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| T |
52558979 |
aaggtcgttttatggtaacatatttttccacagcgattccagaagttagtgtacgtttggattcatggtaagtttgccaaaatcatgatgccaccgtgat |
52559078 |
T |
|
| Q |
101 |
tatggcaaactcactgtgatttcaagcatacacttggacattaggctgctaacctataccaataaaggtggaaccttgggtatgacatgaatatgtcaca |
200 |
Q |
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| T |
52559079 |
tatggcaaactcactgtgatttcaagcatacacttggacattaggctgctaacctataccaataaaggtggaaccttgggtatgacatgaatatgtcaca |
52559178 |
T |
|
| Q |
201 |
gattcagcactacataaacttgtattctgagcttcactcaagaattaaaattgtgctcttaatacagggaataaacaacattgaaggctacaaaataaca |
300 |
Q |
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| T |
52559179 |
ggttcaacactacataaacttgtattctgagcttcgctcaagaattaaaattgtgctcttaatacagggaataaacaacattgaaggctacaaaataaca |
52559278 |
T |
|
| Q |
301 |
cgttctgatcctaaggagttagttgaaagctacaagaagcgattcctggtatcataagacagaactaaatacattttttgaattcacaatgccactcaat |
400 |
Q |
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| T |
52559279 |
cgttctgatcctaaggagttagttgaaagctacaagaagcgattcctggtatcataagacagaactaaatacattttttgaattcacaatgccactcaat |
52559378 |
T |
|
| Q |
401 |
tgctgtgttatccataatcctttcttatatgtaggcaaatccatgaattcaatgttcggcatcatagcaggagtcaagagttccaaaatgggtcagaaaa |
500 |
Q |
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| T |
52559379 |
tgctgtgttatccataatcctttcttatatgtaggcaaatccatgaattcaatgttcggtatcatagcaggagtcaagagttccaaaatgggtcagaaaa |
52559478 |
T |
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| Q |
501 |
tcagagccaaatgcattatatccatccagggaccaggaatcatacgacaagcaccgaccgctagacagactgatgatgtc |
580 |
Q |
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| T |
52559479 |
tcagagccaaatgcattatatccatccagggaccaggaatcatacgacaagcaccgatcgctagacagactgattatgtc |
52559558 |
T |
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