View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17956_low_20 (Length: 265)
Name: NF17956_low_20
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17956_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 20373900 - 20373646
Alignment:
| Q |
1 |
cttgttctgcttgtttttagacctagtgcatccaagcaagaattattactcattatttatatgttgattagaatctaatcttcaataacatagccctcat |
100 |
Q |
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| T |
20373900 |
cttgttctgcttgtttttagacctagtgcatccaagcaagaattattactcattatttatatgttgattagaatctaatctttaataacatagccctcat |
20373801 |
T |
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| Q |
101 |
gttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaacgtttatcagctcctctttcgtgtatggtgtgagct |
200 |
Q |
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| T |
20373800 |
gttacctgtggtgtagggttgtattcatggcagcacggttgaaaattgttgcagcacagtttaacgtttatcagctcctctttcgtgtatggtgtgagct |
20373701 |
T |
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| Q |
201 |
tccagtggctgcagtttgcattggtgtttagtagtttgtttgtgttttttctctg |
255 |
Q |
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| T |
20373700 |
tccagtggctgcagtttgcattggtgtttagtagtttgtttgtgttttttctctg |
20373646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 20423459 - 20423626
Alignment:
| Q |
69 |
tagaatctaatcttcaataacatagccctcatgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaacgtt |
168 |
Q |
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| T |
20423459 |
tagaatctaatctttaataacacagccctcattttacctgtgatgtaggtttgtattcatgtcagcacgattgaaagttgttgcagaacaaatcaatg-t |
20423557 |
T |
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| Q |
169 |
tatcagctcctctttcgtgtatggtgtgagcttccagtggctgcagtttgcattggtgtttagtagttt |
237 |
Q |
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| T |
20423558 |
tgtcagctcgtcgttcgtgtatggtgtgaccttctagtggatgcggtgggctttggtgcttggtagttt |
20423626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 20339679 - 20339771
Alignment:
| Q |
78 |
atcttcaataacatagccctc--atgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaacgtt |
168 |
Q |
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| T |
20339679 |
atctttaataacatagccctcgtatgttacctttggtgtagggttgtattgagggcagcacggttgaaggttgttgcagcccagttcaacgtt |
20339771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 226
Target Start/End: Original strand, 20442526 - 20442680
Alignment:
| Q |
69 |
tagaatctaatcttcaataacatagccctcatgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaacgtt |
168 |
Q |
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| T |
20442526 |
tagaatctaatctttaataacacagcccacattttacctatgatgtaggtttgtattcatgatagcacggttaaaagttgttccagaacacatcaatg-t |
20442624 |
T |
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| Q |
169 |
tatcagctcctctttcgtgtatggtgtgagcttccagtggctgcagtttgcattggtg |
226 |
Q |
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| T |
20442625 |
tgtcagctcgtcgttc--gtatggtgtgaccttccagtggctgcggtttgcgttggtg |
20442680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 20132916 - 20132831
Alignment:
| Q |
69 |
tagaatctaatcttcaataacatagccctcatgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcag |
154 |
Q |
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| T |
20132916 |
tagaatccaacctttaataacatagccctcatgttacattttgtgtagggttgtattcatgggagcacaattgaaggttgttgcag |
20132831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 20140146 - 20140036
Alignment:
| Q |
69 |
tagaatctaatcttcaataacatagccctcatgttacctgtgg---tgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaac |
165 |
Q |
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| T |
20140146 |
tagaatctactctttaataacataaccctcatgtcacctgtgggattgtagggttgtattcatgggagcacaattgaaggttactgcagcacacttcaac |
20140047 |
T |
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| Q |
166 |
gtttatcagct |
176 |
Q |
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| T |
20140046 |
gttgatcagct |
20140036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 20407959 - 20408025
Alignment:
| Q |
171 |
tcagctcctctttcgtgtatggtgtgagcttccagtggctgcagtttgcattggtgtttagtagttt |
237 |
Q |
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| T |
20407959 |
tcagctcgtcgttcgtgtatggtgtgaccttctagtagctgcggtttgcgttggtgcttggtagttt |
20408025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 15963142 - 15963194
Alignment:
| Q |
128 |
tggcagcacggttgaaagttgttgcagcacagtttaacgtttatcagctcctc |
180 |
Q |
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| T |
15963142 |
tggcagcatggttgaaagttgttgcagcacacttcaacgttgatcagctcctc |
15963194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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