View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17956_low_23 (Length: 243)
Name: NF17956_low_23
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17956_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 28272670 - 28272894
Alignment:
| Q |
1 |
tgctaaatgttaggaaaatccttacacatttggtcttatgttagaattttgaactgaaagataagattaaattataagcgttaatgttcattaaaataat |
100 |
Q |
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| T |
28272670 |
tgctaaatcttaggaaaatccttacacatttggtcttatgttagaattttgaactgaaagataagattaaattataagcgttaatgttcattaaaataat |
28272769 |
T |
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| Q |
101 |
ttatgtgagggatcaggttattcaaattttttaagttcaacaataggacatgtagggatagattcaatcaacccaaatccattcaaatccacaatttata |
200 |
Q |
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| T |
28272770 |
ttatgtgagggatcaggttattcaaattttttaagttcaacaataggacatgtagggatagattcaatcaacccaaatccattcaaatccacaatttata |
28272869 |
T |
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| Q |
201 |
tctttatagggattaaacctgaaat |
225 |
Q |
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| T |
28272870 |
tctttatagggattaaacctgaaat |
28272894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28269210 - 28269423
Alignment:
| Q |
1 |
tgctaaatgttaggaaaatcctta-cacatttggtcttatgttagaattttg-aactgaaagataagattaaattataagcgttaatgttcattaaaata |
98 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
28269210 |
tgctaaatgttaagaaaatcctttgcacatttggtcttatgtaagaattttttaactgaaagatatgattaacttataagcgttaatgttcattaaaata |
28269309 |
T |
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| Q |
99 |
atttatgtgagggatcaggttattcaaattttttaagttcaacaataggacatgtagggataga--ttcaatcaacccaaatccattcaaatccacaatt |
196 |
Q |
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| T |
28269310 |
atttatgtgagggatcaggttattcaaattttttaagttcaacaataggacatgtagggatagattttcaatcaacccaaatccattcaaatccacaatt |
28269409 |
T |
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| Q |
197 |
tatatctttatagg |
210 |
Q |
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| T |
28269410 |
tatatctttgtagg |
28269423 |
T |
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Back To:
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