View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17956_low_25 (Length: 228)

Name: NF17956_low_25
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17956_low_25
NF17956_low_25
[»] scaffold1320 (2 HSPs)
scaffold1320 (69-222)||(1579-1732)
scaffold1320 (1-52)||(1753-1804)
[»] chr8 (27 HSPs)
chr8 (69-222)||(15078983-15079136)
chr8 (69-222)||(15167138-15167291)
chr8 (82-221)||(15163312-15163446)
chr8 (1-51)||(15079147-15079197)
chr8 (9-42)||(3456825-3456858)
chr8 (1-46)||(7968940-7968985)
chr8 (1-52)||(4830024-4830076)
chr8 (4-52)||(8837939-8837987)
chr8 (1-52)||(15167066-15167117)
chr8 (1-52)||(37570747-37570798)
chr8 (7-52)||(21557455-21557501)
chr8 (11-52)||(28580970-28581012)
chr8 (1-51)||(36588089-36588139)
chr8 (7-52)||(7987723-7987768)
chr8 (5-45)||(12714370-12714411)
chr8 (8-52)||(27571842-27571887)
chr8 (1-30)||(31511987-31512016)
chr8 (7-36)||(32115416-32115445)
chr8 (1-38)||(35682700-35682737)
chr8 (1-42)||(40919363-40919404)
chr8 (8-52)||(44632178-44632223)
chr8 (8-51)||(7147206-7147250)
chr8 (1-52)||(8020326-8020378)
chr8 (1-52)||(8881291-8881343)
chr8 (1-52)||(11709002-11709054)
chr8 (9-52)||(18422446-18422490)
chr8 (1-52)||(26799200-26799252)
[»] chr2 (28 HSPs)
chr2 (1-52)||(3197073-3197124)
chr2 (1-49)||(10991558-10991606)
chr2 (1-52)||(25395435-25395487)
chr2 (1-52)||(31815880-31815932)
chr2 (1-47)||(11560514-11560561)
chr2 (1-47)||(20120719-20120766)
chr2 (1-52)||(22267529-22267580)
chr2 (1-36)||(41542993-41543028)
chr2 (1-35)||(2429032-2429066)
chr2 (1-35)||(44488021-44488055)
chr2 (7-36)||(4238781-4238810)
chr2 (4-52)||(25603904-25603953)
chr2 (11-44)||(41682389-41682422)
chr2 (1-33)||(145024-145056)
chr2 (1-52)||(660815-660867)
chr2 (9-52)||(3196584-3196628)
chr2 (1-52)||(10156033-10156085)
chr2 (1-52)||(20565068-20565120)
chr2 (1-52)||(22523005-22523057)
chr2 (9-52)||(24581010-24581054)
chr2 (1-52)||(24592839-24592891)
chr2 (4-51)||(27244676-27244724)
chr2 (1-33)||(28202422-28202454)
chr2 (1-36)||(28644541-28644577)
chr2 (1-52)||(29544643-29544695)
chr2 (1-52)||(29809342-29809394)
chr2 (1-52)||(31476987-31477039)
chr2 (1-44)||(44026624-44026668)
[»] chr1 (22 HSPs)
chr1 (1-52)||(6219856-6219907)
chr1 (1-52)||(27533259-27533311)
chr1 (1-51)||(3573319-3573369)
chr1 (1-51)||(41926838-41926888)
chr1 (8-52)||(13401620-13401665)
chr1 (1-42)||(30548095-30548136)
chr1 (1-52)||(29042553-29042605)
chr1 (1-33)||(30678826-30678858)
chr1 (1-48)||(33153877-33153925)
chr1 (4-39)||(48639021-48639056)
chr1 (7-52)||(17917131-17917177)
chr1 (1-42)||(25165095-25165137)
chr1 (7-52)||(43356457-43356503)
chr1 (3-43)||(21341202-21341243)
chr1 (9-42)||(27023659-27023692)
chr1 (1-52)||(2613738-2613790)
chr1 (1-52)||(12268977-12269029)
chr1 (1-52)||(17139510-17139562)
chr1 (8-36)||(28257736-28257764)
chr1 (1-52)||(31962463-31962515)
chr1 (1-52)||(32560989-32561041)
chr1 (16-52)||(42267231-42267267)
[»] chr7 (22 HSPs)
chr7 (1-52)||(7388032-7388084)
chr7 (1-39)||(21411535-21411573)
chr7 (2-42)||(3953458-3953498)
chr7 (1-52)||(27833394-27833446)
chr7 (1-52)||(21136847-21136898)
chr7 (3-42)||(25128951-25128990)
chr7 (1-52)||(35001124-35001175)
chr7 (1-42)||(23221408-23221450)
chr7 (7-52)||(37325977-37326023)
chr7 (1-31)||(40187651-40187681)
chr7 (7-52)||(42227798-42227844)
chr7 (7-52)||(44868148-44868194)
chr7 (1-46)||(16355529-16355574)
chr7 (7-36)||(36755036-36755065)
chr7 (7-36)||(36760833-36760862)
chr7 (11-52)||(44717389-44717430)
chr7 (9-52)||(3536247-3536291)
chr7 (1-52)||(5579709-5579761)
chr7 (1-52)||(7994877-7994929)
chr7 (1-49)||(18505654-18505702)
chr7 (1-52)||(19599161-19599213)
chr7 (1-52)||(46849100-46849152)
[»] chr6 (14 HSPs)
chr6 (8-52)||(32409172-32409216)
chr6 (8-47)||(25023649-25023688)
chr6 (7-52)||(24623310-24623356)
chr6 (1-52)||(788882-788934)
chr6 (9-52)||(15169955-15169999)
chr6 (9-52)||(15178727-15178771)
chr6 (1-52)||(8575570-8575621)
chr6 (1-52)||(11456369-11456420)
chr6 (1-36)||(16390445-16390480)
chr6 (1-42)||(4826306-4826348)
chr6 (1-52)||(8629689-8629741)
chr6 (4-52)||(14610000-14610048)
chr6 (1-52)||(14918293-14918345)
chr6 (1-52)||(20744154-20744206)
[»] chr5 (23 HSPs)
chr5 (1-52)||(19647501-19647553)
chr5 (7-52)||(29695037-29695083)
chr5 (8-46)||(43135193-43135231)
chr5 (7-52)||(20125048-20125093)
chr5 (1-52)||(15889427-15889479)
chr5 (1-52)||(37054262-37054314)
chr5 (1-52)||(11720910-11720961)
chr5 (1-52)||(39914917-39914968)
chr5 (1-47)||(21316898-21316944)
chr5 (1-39)||(24485715-24485753)
chr5 (3-32)||(8682408-8682437)
chr5 (3-32)||(21657412-21657441)
chr5 (1-34)||(27651542-27651575)
chr5 (7-36)||(39963515-39963544)
chr5 (3-31)||(1512873-1512901)
chr5 (1-52)||(3052295-3052347)
chr5 (1-52)||(6489023-6489075)
chr5 (1-52)||(10199035-10199087)
chr5 (1-52)||(12159394-12159446)
chr5 (1-52)||(16701574-16701626)
chr5 (14-42)||(21052998-21053026)
chr5 (1-44)||(27545158-27545202)
chr5 (4-36)||(41630122-41630154)
[»] chr3 (25 HSPs)
chr3 (1-52)||(7464484-7464536)
chr3 (1-52)||(5534695-5534746)
chr3 (1-42)||(43777060-43777101)
chr3 (1-52)||(16980347-16980399)
chr3 (7-47)||(42269320-42269360)
chr3 (9-52)||(45334213-45334257)
chr3 (1-52)||(4564625-4564676)
chr3 (9-52)||(23332674-23332717)
chr3 (1-35)||(12408194-12408228)
chr3 (7-52)||(25727960-25728006)
chr3 (1-35)||(26973377-26973411)
chr3 (3-52)||(34899115-34899165)
chr3 (1-35)||(36690028-36690062)
chr3 (1-39)||(46226084-46226122)
chr3 (4-52)||(17755140-17755189)
chr3 (4-52)||(19056460-19056509)
chr3 (8-52)||(24521671-24521716)
chr3 (1-30)||(55494705-55494734)
chr3 (1-52)||(14030728-14030780)
chr3 (8-36)||(22843487-22843515)
chr3 (1-52)||(29631202-29631254)
chr3 (1-52)||(38898202-38898254)
chr3 (1-52)||(39779040-39779092)
chr3 (1-52)||(48315017-48315069)
chr3 (11-51)||(49223021-49223061)
[»] chr4 (22 HSPs)
chr4 (1-52)||(17656787-17656838)
chr4 (7-52)||(21649300-21649346)
chr4 (7-52)||(48159699-48159745)
chr4 (1-52)||(21318246-21318298)
chr4 (1-52)||(22164262-22164314)
chr4 (1-36)||(22411780-22411815)
chr4 (1-36)||(36071160-36071195)
chr4 (1-31)||(23160056-23160086)
chr4 (1-50)||(36479007-36479057)
chr4 (1-42)||(2587704-2587745)
chr4 (1-42)||(6586157-6586198)
chr4 (1-42)||(29228746-29228787)
chr4 (7-52)||(37462133-37462178)
chr4 (7-47)||(50650925-50650966)
chr4 (1-52)||(9028065-9028117)
chr4 (1-52)||(11949756-11949808)
chr4 (1-29)||(14197448-14197476)
chr4 (9-52)||(17948129-17948173)
chr4 (1-33)||(25999413-25999445)
chr4 (9-48)||(37005516-37005556)
chr4 (9-52)||(50380829-50380873)
chr4 (7-42)||(56096226-56096262)
[»] scaffold1063 (1 HSPs)
scaffold1063 (3-31)||(1075-1103)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-52)||(161157-161209)
[»] scaffold0011 (1 HSPs)
scaffold0011 (8-36)||(189982-190010)


Alignment Details
Target: scaffold1320 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 1732 - 1579
Alignment:
Q  69 ctgactttaagtgtgatatttttacaatttataactattagttaaaacacgaaattaaaagaaaatgttttctggaattgaattgcaatttgtatttatt 168  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1732 ctgacttttagtgtgatatttttacaatttataactattagtgaaaacacgaaattaaaagaaaatgttttctggaactgaattgcaatttgtatttatt 1633  T
Q  169 tcttgtaactttttcagaagactggttgaagttgcaagaagctgatgatgatgt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1632 tcttgtaactttttcagaggactggttgaagttgcaagaagctgatgatgatgt 1579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1804 - 1753
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||| |||||||||||||||  ||||||| ||||||||| |||||||||    
T  1804 tggtaggaacaatgcataatatacataaggttagggttcaaaccccgaccac 1753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 15079136 - 15078983
Alignment:
Q  69 ctgactttaagtgtgatatttttacaatttataactattagttaaaacacgaaattaaaagaaaatgttttctggaattgaattgcaatttgtatttatt 168  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  15079136 ctgacttttagtgtgatatttttacaatttataactattagtgaaaacacgaaattaaaagaaaatgttttctggaactgaattgcaaattgtatttatt 15079037  T
Q  169 tcttgtaactttttcagaagactggttgaagttgcaagaagctgatgatgatgt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15079036 tcttgtaactttttcagaagactggttgaagttgcaagaagctgatgatgatgt 15078983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 69 - 222
Target Start/End: Original strand, 15167138 - 15167291
Alignment:
Q  69 ctgactttaagtgtgatatttttacaatttataactattagttaaaacacgaaattaaaagaaaatgttttctggaattgaattgcaatttgtatttatt 168  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15167138 ctgacttttagtgtgatatttttacaatttataactattagtgaaaacacgaaattaaaagaaaatgttttctggaactgaattgcaatttgtatttatt 15167237  T
Q  169 tcttgtaactttttcagaagactggttgaagttgcaagaagctgatgatgatgt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15167238 tcttgtaactttttcagaggactggttgaagttgcaagaagctaatgatgatgt 15167291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 15163312 - 15163446
Alignment:
Q  82 tgatatttttacaatttataactattagttaaaacacgaaattaaaagaaaatgttttctggaattgaattgcaatttgtatttatttcttgtaactttt 181  Q
    |||||||||||| |||||  | ||||||| |||||| ||||||||||||||  ||||||||||| |||||||||||| ||||||||||||| ||||||||    
T  15163312 tgatatttttacgattta--attattagtgaaaacatgaaattaaaagaaa--gttttctggaactgaattgcaatt-gtatttatttcttttaactttt 15163406  T
Q  182 tcagaagactggttgaagttgcaagaagctgatgatgatg 221  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  15163407 tcagaggactggttgaagttgcaagaagctgatgatgatg 15163446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15079197 - 15079147
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgacca 51  Q
    ||||||||||||||||||||||||| ||||||  | |||||||||||||||    
T  15079197 tggtagggacaatgcataatatatgcaaggtttagattcaaatcccgacca 15079147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 3456858 - 3456825
Alignment:
Q  9 acaatgcataatatatgtaaggttcgggttcaaa 42  Q
    ||||||||||||||||||||||||||||||||||    
T  3456858 acaatgcataatatatgtaaggttcgggttcaaa 3456825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7968985 - 7968940
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatccc 46  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  7968985 tggtaaggacaatgcataatatatgcaaggtccgggttcaaatccc 7968940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4830024 - 4830076
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||| ||||||| |||||| ||||||||||||    
T  4830024 tggtatggacaatgcataatatatgcaaggttcggggttcgaatcccgaccac 4830076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 8837939 - 8837987
Alignment:
Q  4 tagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    |||||||||||||||||||||  ||||| ||||||||||| ||||||||    
T  8837939 tagggacaatgcataatatatacaaggtccgggttcaaattccgaccac 8837987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15167066 - 15167117
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||| |||||||||||||||  ||||||| ||||||||| |||||||||    
T  15167066 tggtaggaacaatgcataatatacataaggttagggttcaaaccccgaccac 15167117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37570798 - 37570747
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||| ||||||| ||||| |||||||||||| ||||||||| |||||||||    
T  37570798 tggtatggacaatacataacatatgtaaggttggggttcaaaccccgaccac 37570747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 21557455 - 21557501
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcg-ggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| || ||||| ||||||||||||    
T  21557455 ggacaatgcataatatatgtaaggtccgaggttcgaatcccgaccac 21557501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 28580970 - 28581012
Alignment:
Q  11 aatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||| ||||||||||||| |||||||||||||||||||    
T  28580970 aatgcataaaatatgtaaggttcggggttcaaatcccgaccac 28581012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36588139 - 36588089
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgacca 51  Q
    ||||||| |||||| ||||||||||||||||||| | ||||| ||||||||    
T  36588139 tggtaggaacaatgtataatatatgtaaggttcgtgatcaaaccccgacca 36588089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 7987768 - 7987723
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||| ||||||||||| ||||| ||||||||||| ||||||||    
T  7987768 ggacaatacataatatatgcaaggtccgggttcaaattccgaccac 7987723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 12714411 - 12714370
Alignment:
Q  5 agggacaatgcataatatatgtaaggttc-gggttcaaatcc 45  Q
    ||||||||||||||||||||| ||||||| ||||||||||||    
T  12714411 agggacaatgcataatatatgcaaggttcggggttcaaatcc 12714370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 27571887 - 27571842
Alignment:
Q  8 gacaatgcataatatatgtaagg-ttcgggttcaaatcccgaccac 52  Q
    |||||||||||||||||| |||| || |||||||||||||||||||    
T  27571887 gacaatgcataatatatgcaaggtttggggttcaaatcccgaccac 27571842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 31511987 - 31512016
Alignment:
Q  1 tggtagggacaatgcataatatatgtaagg 30  Q
    ||||||||||||||||||||||||||||||    
T  31511987 tggtagggacaatgcataatatatgtaagg 31512016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 32115445 - 32115416
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcggg 36  Q
    ||||||||||||||||||||||||||||||    
T  32115445 ggacaatgcataatatatgtaaggttcggg 32115416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35682737 - 35682700
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggtt 38  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  35682737 tggtacggacaatccataatatatgtaaggttcgggtt 35682700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40919404 - 40919363
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaa 42  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||    
T  40919404 tggtaggaacaatgcataatatatgcaaggtccgggttcaaa 40919363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 44632223 - 44632178
Alignment:
Q  8 gacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||| |||||||| ||||||||| |||||||||    
T  44632223 gacaatgcataatatatataaggttcggggttcaaaccccgaccac 44632178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 7147250 - 7147206
Alignment:
Q  8 gacaatgcataatatatgtaaggttcg-ggttcaaatcccgacca 51  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||    
T  7147250 gacaatgtataatatatgtaaggttcgtggttcaaaccccgacca 7147206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8020326 - 8020378
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcggg-ttcaaatcccgaccac 52  Q
    ||||||| |||| ||||||||||||||||||||||| |||||| ||| |||||    
T  8020326 tggtaggaacaacgcataatatatgtaaggttcgggattcaaaccccaaccac 8020378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8881291 - 8881343
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||| | ||||||||| |||| ||||    
T  8881291 tggtagggacaatgcataatatatgcaaggtccagggttcaaaccccggccac 8881343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11709002 - 11709054
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcg-ggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||| ||  ||||||| |||||||||    
T  11709002 tggtagggacaatgcataatatatgcaaggtccgaagttcaaaccccgaccac 11709054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 18422490 - 18422446
Alignment:
Q  9 acaatgcataatatatgtaaggttcggg-ttcaaatcccgaccac 52  Q
    |||||||||||||||||||||||||||| |||||| ||| |||||    
T  18422490 acaatgcataatatatgtaaggttcgggattcaaaccccaaccac 18422446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26799200 - 26799252
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||| ||||| ||||||| ||||| ||| |||||||||    
T  26799200 tggtagggacaatgcataaaatatgcaaggttcggggttaaaaccccgaccac 26799252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3197124 - 3197073
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  3197124 tggtagggacaatgcataatatatgcaaggttcggattcaaaccccgaccac 3197073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10991558 - 10991606
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgac 49  Q
    ||||| ||||||| ||||||||||||||||| ||||||| |||||||||    
T  10991558 tggtaaggacaatacataatatatgtaaggtccgggttcgaatcccgac 10991606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25395487 - 25395435
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||| ||||||||||||||||| |||||||  ||||||||||||||||||    
T  25395487 tggtaggaacaatgcataatatatgcaaggttcaaggttcaaatcccgaccac 25395435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31815932 - 31815880
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||| | ||||||||| |||||||||    
T  31815932 tggtagggacaatgcataatatatgcaaggtccggggttcaaaccccgaccac 31815880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11560514 - 11560561
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccg 47  Q
    ||||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  11560514 tggtagggacaatgcataatatatgcaaggttcagggttcaaaccccg 11560561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20120766 - 20120719
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccg 47  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||||||    
T  20120766 tggtaaggacaatgcataatatatgcaaggttcggggttcaaatcccg 20120719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22267529 - 22267580
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||| |||||| | ||||||| |||||||||    
T  22267529 tggtacggacaatgcataatatatgcaaggtttgagttcaaaccccgaccac 22267580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 41543028 - 41542993
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcggg 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41543028 tggtatggacaatgcataatatatgtaaggttcggg 41542993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2429032 - 2429066
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgg 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  2429032 tggtaaggacaatgcataatatatgtaaggttcgg 2429066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44488055 - 44488021
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgg 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  44488055 tggtaaggacaatgcataatatatgtaaggttcgg 44488021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 4238781 - 4238810
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcggg 36  Q
    ||||||||||||||||||||||||||||||    
T  4238781 ggacaatgcataatatatgtaaggttcggg 4238810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 25603953 - 25603904
Alignment:
Q  4 tagggacaatgcataatatatgtaagg-ttcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||| ||||| || |||||||||||| ||||||    
T  25603953 tagggacaatgcataatatatataaggtttggggttcaaatcctgaccac 25603904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 41682422 - 41682389
Alignment:
Q  11 aatgcataatatatgtaaggttcgggttcaaatc 44  Q
    |||||||||||||||||||||| |||||||||||    
T  41682422 aatgcataatatatgtaaggttagggttcaaatc 41682389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 145056 - 145024
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc 33  Q
    ||||| |||||||||||||||||||||||||||    
T  145056 tggtatggacaatgcataatatatgtaaggttc 145024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 660867 - 660815
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||| ||||| | ||||||||| |||||||||    
T  660867 tggtatggacaatgcataatatatgcaaggtccagggttcaaaccccgaccac 660815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 3196584 - 3196628
Alignment:
Q  9 acaatgcataatatatgtaaggttcg-ggttcaaatcccgaccac 52  Q
    |||||||||||||||||||||||||| | |||||||| |||||||    
T  3196584 acaatgcataatatatgtaaggttcgagattcaaatctcgaccac 3196628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10156033 - 10156085
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgg-gttcaaatcccgaccac 52  Q
    ||||| ||||||| ||||||||||| ||||||||| |||| ||||||||||||    
T  10156033 tggtaaggacaatacataatatatgcaaggttcggtgttcgaatcccgaccac 10156085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20565120 - 20565068
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||| | ||||||||| ||| |||||    
T  20565120 tggtagggacaatgcataatatatgcaaggtccggggttcaaaccccaaccac 20565068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22523057 - 22523005
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcg-ggttcaaatcccgaccac 52  Q
    ||||| ||||||| ||||||||||| |||||||| ||||||||||||| ||||    
T  22523057 tggtatggacaatacataatatatgcaaggttcgaggttcaaatcccggccac 22523005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 24581054 - 24581010
Alignment:
Q  9 acaatgcataatatatgtaaggttcg-ggttcaaatcccgaccac 52  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||    
T  24581054 acaatgcataatatatgcaaggttcgaggttcaaaccccgaccac 24581010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24592891 - 24592839
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||| | ||||||||| |||| ||||    
T  24592891 tggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggccac 24592839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 27244676 - 27244724
Alignment:
Q  4 tagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgacca 51  Q
    |||||||||||||||||||||| ||||| | ||||||||| ||||||||    
T  27244676 tagggacaatgcataatatatgcaaggtctagggttcaaagcccgacca 27244724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28202422 - 28202454
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc 33  Q
    ||||| |||||||||||||||||||||||||||    
T  28202422 tggtatggacaatgcataatatatgtaaggttc 28202454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28644541 - 28644577
Alignment:
Q  1 tggtagggacaatgcataatatatgt-aaggttcggg 36  Q
    |||||||||||||||||||||||||| ||||||||||    
T  28644541 tggtagggacaatgcataatatatgtcaaggttcggg 28644577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29544643 - 29544695
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||| | ||||||||| |||| ||||    
T  29544643 tggtagggacaatgcataatatatgcaaggtccggggttcaaaccccggccac 29544695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29809342 - 29809394
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||| | |||||| ||||||| ||||    
T  29809342 tggtagggacaatgcataatatatgaaaggtacggggttcgaatcccggccac 29809394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31476987 - 31477039
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||| ||||||||||||||  ||||||| |||||||||||||| ||||    
T  31476987 tggtagggagaatgcataatatatacaaggttcggggttcaaatcccggccac 31477039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44026624 - 44026668
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatc 44  Q
    ||||| |||||| |||||||||||||||||||| |||||||||||    
T  44026624 tggtatggacaacgcataatatatgtaaggttcggggttcaaatc 44026668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6219907 - 6219856
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  6219907 tggtagggacaatacataatatatgtaaggtccgggttcaaatcctgaccac 6219856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 27533259 - 27533311
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  27533259 tggtagggacaatgcataatatatgcaaggttcggggttcaaaccccgaccac 27533311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3573369 - 3573319
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgacca 51  Q
    ||||||| |||||||||||||||||||||||| | ||| ||||||||||||    
T  3573369 tggtaggaacaatgcataatatatgtaaggtttgagtttaaatcccgacca 3573319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41926838 - 41926888
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgacca 51  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||| |||||||    
T  41926838 tggtaaggacaatgcataatatatgtaaggtccgggttcgaattccgacca 41926888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 13401620 - 13401665
Alignment:
Q  8 gacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||    
T  13401620 gacaatgcataatatatgtaaggttcggggttcaaaccccgaccac 13401665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30548136 - 30548095
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaa 42  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  30548136 tggtaaggacaatgcataatatatgcaaggttcgggttcaaa 30548095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29042553 - 29042605
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||| ||||||||||||||||||| | | |||||||||||||||||||    
T  29042553 tggtagggataatgcataatatatgtaagatccggggttcaaatcccgaccac 29042605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30678858 - 30678826
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc 33  Q
    |||||||||||||||||||||||||||||||||    
T  30678858 tggtagggacaatgcataatatatgtaaggttc 30678826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33153925 - 33153877
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcg-ggttcaaatcccga 48  Q
    ||||||||||||||||||||||||||||||| || |||||||| |||||    
T  33153925 tggtagggacaatgcataatatatgtaaggtccgaggttcaaaccccga 33153877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 48639056 - 48639021
Alignment:
Q  4 tagggacaatgcataatatatgtaaggttcgggttc 39  Q
    ||||||||||||||||||||||||||||| ||||||    
T  48639056 tagggacaatgcataatatatgtaaggtttgggttc 48639021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 17917177 - 17917131
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcggg-ttcaaatcccgaccac 52  Q
    ||||||||||||| |||||||||||||||| |||||| |||||||||    
T  17917177 ggacaatgcataaaatatgtaaggttcgggattcaaaccccgaccac 17917131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25165137 - 25165095
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaa 42  Q
    ||||| ||||||||||||||||||||||||| |||||||||||    
T  25165137 tggtatggacaatgcataatatatgtaaggtctcgggttcaaa 25165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 43356457 - 43356503
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcgg-gttcaaatcccgaccac 52  Q
    |||||||||||||||||||||||||| || ||||||| |||||||||    
T  43356457 ggacaatgcataatatatgtaaggtttggagttcaaaccccgaccac 43356503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 21341202 - 21341243
Alignment:
Q  3 gtagggacaatgcataatatatgtaaggttcg-ggttcaaat 43  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  21341202 gtagggacaatgcataatatatgcaaggttcgaggttcaaat 21341243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 27023692 - 27023659
Alignment:
Q  9 acaatgcataatatatgtaaggttcgggttcaaa 42  Q
    ||||||||||||||||| ||||||||||||||||    
T  27023692 acaatgcataatatatgcaaggttcgggttcaaa 27023659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2613738 - 2613790
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||| ||||||||||||| |||||| || |||||||||    
T  2613738 tggtatggacaatgcataaaatatgtaaggttcggggttcgaaccccgaccac 2613790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12269029 - 12268977
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||| ||||||||||||||||| ||||| | ||||||||| |||||||||    
T  12269029 tggtaggaacaatgcataatatatgcaaggtccggggttcaaaccccgaccac 12268977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17139562 - 17139510
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||  ||||| | ||||||||| |||||||||    
T  17139562 tggtagggacaatgcataatatattcaaggtccggggttcaaaccccgaccac 17139510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 28257736 - 28257764
Alignment:
Q  8 gacaatgcataatatatgtaaggttcggg 36  Q
    |||||||||||||||||||||||||||||    
T  28257736 gacaatgcataatatatgtaaggttcggg 28257764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31962463 - 31962515
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgaccac 52  Q
    ||||| |||||||||||||||||||||| || | |||||| ||||||||||||    
T  31962463 tggtaaggacaatgcataatatatgtaaagtctagggttcgaatcccgaccac 31962515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 32560989 - 32561041
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcggg-ttcaaatcccgaccac 52  Q
    ||||| |||||||| |||||||||| ||||| |||| ||||||||||||||||    
T  32560989 tggtatggacaatgtataatatatgcaaggtccggggttcaaatcccgaccac 32561041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 42267231 - 42267267
Alignment:
Q  16 ataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    |||||||||||||||| | ||||||||||||||||||    
T  42267231 ataatatatgtaaggtccaggttcaaatcccgaccac 42267267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7388084 - 7388032
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcggg-ttcaaatcccgaccac 52  Q
    |||| ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  7388084 tggttgggacaatgcataatatatgtaaggttcgggattcaaaccccgaccac 7388032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 21411535 - 21411573
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttc 39  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  21411535 tggtagggacaatgcataatatatgtaaagttcgggttc 21411573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 3953458 - 3953498
Alignment:
Q  2 ggtagggacaatgcataatatatgtaaggttcgggttcaaa 42  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  3953458 ggtatggacaatgcataatatatgcaaggttcgggttcaaa 3953498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27833446 - 27833394
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||||||||| | ||||||||| |||||||||    
T  27833446 tggtaaggacaatgcataatatatgtaaggtccggggttcaaaccccgaccac 27833394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21136847 - 21136898
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||| |||||||| |||||||||| ||||||  ||||||||||||||||||    
T  21136847 tggtatggacaatgtataatatatgcaaggttgaggttcaaatcccgaccac 21136898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 25128990 - 25128951
Alignment:
Q  3 gtagggacaatgcataatatatgtaaggttcgggttcaaa 42  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  25128990 gtagggacaatgtataatatatgcaaggttcgggttcaaa 25128951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35001175 - 35001124
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    |||||| ||||||||||||||||| ||||||| | ||||||| |||||||||    
T  35001175 tggtagagacaatgcataatatatttaaggtttgagttcaaaccccgaccac 35001124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23221408 - 23221450
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcg-ggttcaaa 42  Q
    |||||| ||||||||||||||||||||||||||| ||||||||    
T  23221408 tggtagagacaatgcataatatatgtaaggttcgtggttcaaa 23221450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 37326023 - 37325977
Alignment:
Q  7 ggacaatgcat-aatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  37326023 ggacaatgcattaatatatgtaaggttcgggttcaaaccccggccac 37325977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 40187681 - 40187651
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt 31  Q
    |||||||||||||||||||||||||||||||    
T  40187681 tggtagggacaatgcataatatatgtaaggt 40187651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 42227844 - 42227798
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcg-ggttcaaatcccgaccac 52  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||    
T  42227844 ggacaatgcataatatatgtaaggttcgaggttcaaactccgaccac 42227798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 44868194 - 44868148
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcg-ggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||||    
T  44868194 ggacaatgcataatatatgtaaggtccgaggttcaaattccgaccac 44868148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16355529 - 16355574
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatccc 46  Q
    |||||| |||| || ||||||||||||||||| |||||||||||||    
T  16355529 tggtagagacattgtataatatatgtaaggttggggttcaaatccc 16355574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 36755036 - 36755065
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcggg 36  Q
    ||||||||||||||||||||||||||||||    
T  36755036 ggacaatgcataatatatgtaaggttcggg 36755065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 36760833 - 36760862
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcggg 36  Q
    ||||||||||||||||||||||||||||||    
T  36760833 ggacaatgcataatatatgtaaggttcggg 36760862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 44717389 - 44717430
Alignment:
Q  11 aatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    |||| |||||||||||||| |||| |||||||||||||||||    
T  44717389 aatgtataatatatgtaagattcgagttcaaatcccgaccac 44717430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 3536291 - 3536247
Alignment:
Q  9 acaatgcataatatatgtaaggttcggg-ttcaaatcccgaccac 52  Q
    |||||||||||||||||||||||||||| ||||||  ||||||||    
T  3536291 acaatgcataatatatgtaaggttcgggattcaaactccgaccac 3536247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5579709 - 5579761
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgaccac 52  Q
    ||||||||||| ||||||||||||| ||||| | ||||||||| |||||||||    
T  5579709 tggtagggacagtgcataatatatgcaaggtctggggttcaaaccccgaccac 5579761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7994929 - 7994877
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgaccac 52  Q
    ||||||||||||  ||||||||||||||||| | ||||||||| |||||||||    
T  7994929 tggtagggacaaaacataatatatgtaaggtctggggttcaaaccccgaccac 7994877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18505702 - 18505654
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgac 49  Q
    ||||||||||||||||||| ||||| ||| | |||||||||| ||||||    
T  18505702 tggtagggacaatgcataaaatatgcaagatccgggttcaaaccccgac 18505654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19599161 - 19599213
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||| ||||| | ||||||||| |||||||||    
T  19599161 tggtatggacaatgcataatatatgcaaggtccggggttcaaaccccgaccac 19599213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 46849152 - 46849100
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgg-gttcaaatcccgaccac 52  Q
    |||||| ||||||||||||||||||||| ||| || ||||||| |||||||||    
T  46849152 tggtagagacaatgcataatatatgtaaagtttggagttcaaaccccgaccac 46849100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 32409216 - 32409172
Alignment:
Q  8 gacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||||||||||||| | |||||||    
T  32409216 gacaatgcataatatatgtaaggttcgggttcaaacctcgaccac 32409172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 25023649 - 25023688
Alignment:
Q  8 gacaatgcataatatatgtaaggttcgggttcaaatcccg 47  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  25023649 gacaatgcataatatatgtaaagttcgggttcaaatcccg 25023688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 24623356 - 24623310
Alignment:
Q  7 ggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  24623356 ggacaatgcataatatatgtaaggttcggggttcaaaccccgaccac 24623310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 788882 - 788934
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgg-gttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  788882 tggtaaggacaatgcataatatatgcaaggttcggagttcaaaccccgaccac 788934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 15169955 - 15169999
Alignment:
Q  9 acaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||    
T  15169955 acaatgcataatatatgtaaggttcggggttcaaaccccgaccac 15169999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 15178727 - 15178771
Alignment:
Q  9 acaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||    
T  15178727 acaatgcataatatatgtaaggttcggggttcaaaccccgaccac 15178771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8575621 - 8575570
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| | |||||| ||| ||||||| |||||    
T  8575621 tggtagggacaatgcataatatatgcatggttcgagttaaaatcccaaccac 8575570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11456420 - 11456369
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||| |||||||||||||||||||||||||  ||||||||| |||| ||||    
T  11456420 tggtatggacaatgcataatatatgtaaggtcggggttcaaaccccggccac 11456369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 16390445 - 16390480
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcggg 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  16390445 tggtagggacaatgcataatatatgtaaggtccggg 16390480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4826306 - 4826348
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcg-ggttcaaa 42  Q
    |||||| ||||||||||||||||||||||||||| ||||||||    
T  4826306 tggtagagacaatgcataatatatgtaaggttcgaggttcaaa 4826348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8629741 - 8629689
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||| | |||||||    
T  8629741 tggtatggacaatgcataatatatgcaaggttcggggttcaaacctcgaccac 8629689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 14610000 - 14610048
Alignment:
Q  4 tagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||||||  |||||||||||||||| |||||||||| |||| ||||    
T  14610000 tagggacaatctataatatatgtaaggtccgggttcaaaccccggccac 14610048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14918345 - 14918293
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||  ||||| | ||||||||| |||||||||    
T  14918345 tggtagggacaatgcataatatatacaaggtctggggttcaaaccccgaccac 14918293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20744154 - 20744206
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||| ||||| | ||||||||| |||||||||    
T  20744154 tggtatggacaatgcataatatatgcaaggtctggggttcaaaccccgaccac 20744206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19647553 - 19647501
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgaccac 52  Q
    |||||||||||||| |||||||||||||||| | |||||||||||||||||||    
T  19647553 tggtagggacaatgtataatatatgtaaggtctggggttcaaatcccgaccac 19647501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 29695037 - 29695083
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcg-ggttcaaatcccgaccac 52  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||    
T  29695037 ggacaatgcataatatatgtaaggttcgtggttcaaaccccgaccac 29695083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 43135231 - 43135193
Alignment:
Q  8 gacaatgcataatatatgtaaggttcgggttcaaatccc 46  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  43135231 gacaatgcataatatatgtaaggtccgggttcaaatccc 43135193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 20125048 - 20125093
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||    
T  20125048 ggacaatgcataatatatgcaaggttcgggttcaaactccgaccac 20125093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15889427 - 15889479
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||| | ||||||||| |||||||||    
T  15889427 tggtagggacaatgcataatatatgcaaggtctagggttcaaaccccgaccac 15889479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37054314 - 37054262
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    |||||||||||||||||||||||| |||||||| |||||||||  ||||||||    
T  37054314 tggtagggacaatgcataatatatataaggttcggggttcaaactccgaccac 37054262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11720910 - 11720961
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| |||||  ||||||||| |||| ||||    
T  11720910 tggtagggacaatgcataatatatgcaaggtcggggttcaaaccccggccac 11720961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39914917 - 39914968
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||| ||||| ||||||| || |||||||||    
T  39914917 tggtaaggacaatgcataatatatgcaaggtccgggttcgaaccccgaccac 39914968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21316898 - 21316944
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccg 47  Q
    ||||| ||||||||||||||||||| ||||| |||||||||| ||||    
T  21316898 tggtaaggacaatgcataatatatgaaaggtccgggttcaaaccccg 21316944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24485715 - 24485753
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttc 39  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  24485715 tggtatggacaatgcataatatatgcaaggttcgggttc 24485753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 8682437 - 8682408
Alignment:
Q  3 gtagggacaatgcataatatatgtaaggtt 32  Q
    ||||||||||||||||||||||||||||||    
T  8682437 gtagggacaatgcataatatatgtaaggtt 8682408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 21657441 - 21657412
Alignment:
Q  3 gtagggacaatgcataatatatgtaaggtt 32  Q
    ||||||||||||||||||||||||||||||    
T  21657441 gtagggacaatgcataatatatgtaaggtt 21657412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 27651575 - 27651542
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcg 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  27651575 tggtaaggacaatgcataatatatgtaaggttcg 27651542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 39963515 - 39963544
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcggg 36  Q
    ||||||||||||||||||||||||||||||    
T  39963515 ggacaatgcataatatatgtaaggttcggg 39963544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 1512873 - 1512901
Alignment:
Q  3 gtagggacaatgcataatatatgtaaggt 31  Q
    |||||||||||||||||||||||||||||    
T  1512873 gtagggacaatgcataatatatgtaaggt 1512901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3052295 - 3052347
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcg-ggttcaaatcccgaccac 52  Q
    |||||||||||||| |||||||||| |||||||| |||||||| | |||||||    
T  3052295 tggtagggacaatgtataatatatgcaaggttcgaggttcaaacctcgaccac 3052347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6489023 - 6489075
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||| | ||||||||| |||| ||||    
T  6489023 tggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggccac 6489075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10199035 - 10199087
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgaccac 52  Q
    ||||| |||||||||||||||||| |||||| | |||||| ||||||||||||    
T  10199035 tggtatggacaatgcataatatatataaggtgtggggttcgaatcccgaccac 10199087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12159446 - 12159394
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    |||||| ||||||| |||||||||||||||||| || |||||| |||||||||    
T  12159446 tggtagagacaatgtataatatatgtaaggttcaggattcaaaccccgaccac 12159394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16701626 - 16701574
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcggg-ttcaaatcccgaccac 52  Q
    |||||||||||||| |||||||||| ||||| |||| |||||| |||||||||    
T  16701626 tggtagggacaatgaataatatatgcaaggtccgggattcaaaccccgaccac 16701574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 21052998 - 21053026
Alignment:
Q  14 gcataatatatgtaaggttcgggttcaaa 42  Q
    |||||||||||||||||||||||||||||    
T  21052998 gcataatatatgtaaggttcgggttcaaa 21053026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 27545202 - 27545158
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcg-ggttcaaatc 44  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||    
T  27545202 tggtagggacaatgcataatatatgcaagggtcgaggttcaaatc 27545158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 41630154 - 41630122
Alignment:
Q  4 tagggacaatgcataatatatgtaaggttcggg 36  Q
    |||||||||||||||||||||| ||||||||||    
T  41630154 tagggacaatgcataatatatgcaaggttcggg 41630122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7464536 - 7464484
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||||||||| | ||||||||| |||||||||    
T  7464536 tggtagggacaatgcataatatatgtaaggtccggggttcaaaccccgaccac 7464484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5534746 - 5534695
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  5534746 tggtatggacaatgcgtaaaatatgcaaggttcgggttcaaatcccgaccac 5534695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43777101 - 43777060
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaa 42  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  43777101 tggtagggaccatgcataatatatgcaaggttcgggttcaaa 43777060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16980399 - 16980347
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||| |||||||  ||||||||||||||||||    
T  16980399 tggtaaggacaatgcataatatatgcaaggttcatggttcaaatcccgaccac 16980347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 42269320 - 42269360
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcgggttcaaatcccg 47  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  42269320 ggacaatgcataatatatgtaaggttcgagttcaaaccccg 42269360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 45334213 - 45334257
Alignment:
Q  9 acaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||    
T  45334213 acaatgcataatatatgcaaggttcggggttcaaatcccgaccac 45334257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4564625 - 4564676
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||| ||| |||| ||| |||||||    
T  4564625 tggtagggacaatgcataatatatgcaaggtccggattcatatctcgaccac 4564676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 23332674 - 23332717
Alignment:
Q  9 acaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||    
T  23332674 acaatgcataatatatgtatggttctggttcaaaccccgaccac 23332717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12408194 - 12408228
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgg 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  12408194 tggtagggacaatgcataatatatgtaaagttcgg 12408228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 25728006 - 25727960
Alignment:
Q  7 ggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||| ||||| | |||||||||||||||||||    
T  25728006 ggacaatgcataatatatgcaaggtccggggttcaaatcccgaccac 25727960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26973377 - 26973411
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgg 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  26973377 tggtaaggacaatgcataatatatgtaaggttcgg 26973411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 34899115 - 34899165
Alignment:
Q  3 gtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||| ||||| | ||||||||| |||||||||    
T  34899115 gtagggacaatgcataatatatgcaaggtccggggttcaaaccccgaccac 34899165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36690028 - 36690062
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgg 35  Q
    ||||||| |||||||||||||||||||||||||||    
T  36690028 tggtaggaacaatgcataatatatgtaaggttcgg 36690062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 46226122 - 46226084
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttc 39  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  46226122 tggtagggacaatgcataatatatgcaaggtccgggttc 46226084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 17755140 - 17755189
Alignment:
Q  4 tagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    |||| ||||| ||||||||||||||||||| |||||||||| ||||||||    
T  17755140 taggaacaatacataatatatgtaaggttcggggttcaaattccgaccac 17755189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 19056460 - 19056509
Alignment:
Q  4 tagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    |||| ||||| ||||||||||||||||||| |||||||||| ||||||||    
T  19056460 taggaacaatacataatatatgtaaggttcggggttcaaattccgaccac 19056509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 24521671 - 24521716
Alignment:
Q  8 gacaatgcataatatatgtaaggttcgg-gttcaaatcccgaccac 52  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||    
T  24521671 gacaatgcataaaatatgtaaggttcggagttcaaatctcgaccac 24521716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 55494705 - 55494734
Alignment:
Q  1 tggtagggacaatgcataatatatgtaagg 30  Q
    ||||||||||||||||||||||||||||||    
T  55494705 tggtagggacaatgcataatatatgtaagg 55494734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14030780 - 14030728
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgg-gttcaaatcccgaccac 52  Q
    |||||||||||| |||||||||||| |||||| || ||||||| |||||||||    
T  14030780 tggtagggacaacgcataatatatgcaaggtttggagttcaaaccccgaccac 14030728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 22843487 - 22843515
Alignment:
Q  8 gacaatgcataatatatgtaaggttcggg 36  Q
    |||||||||||||||||||||||||||||    
T  22843487 gacaatgcataatatatgtaaggttcggg 22843515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29631202 - 29631254
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcggg-ttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||| |||||||||| |||||| |||| ||||    
T  29631202 tggtatggacaatgcataatatatgcaaggttcgggattcaaaccccggccac 29631254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38898254 - 38898202
Alignment:
Q  1 tggtagggacaatgcataatatatgtaagg-ttcgggttcaaatcccgaccac 52  Q
    ||||| |||||||| ||||||||||||||| || |||||| ||||||||||||    
T  38898254 tggtaaggacaatgtataatatatgtaaggtttagggttcgaatcccgaccac 38898202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39779040 - 39779092
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||| ||| |||||    
T  39779040 tggtatggacaatgcataatatatgcaaggttcggggttcaaaccccaaccac 39779092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 48315069 - 48315017
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||| ||| ||||||||||||||| ||||| | |||||||||||||||||||    
T  48315069 tggtaaggataatgcataatatatgcaaggtccggggttcaaatcccgaccac 48315017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 49223061 - 49223021
Alignment:
Q  11 aatgcataatatatgtaaggttcgggttcaaatcccgacca 51  Q
    ||||||||||||||| |||||| |||||| |||||||||||    
T  49223061 aatgcataatatatgcaaggttggggttcgaatcccgacca 49223021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17656838 - 17656787
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  17656838 tggtatggacaatgcataatatatgtaaggttcaggttcgaatcccggccac 17656787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 21649300 - 21649346
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcggg-ttcaaatcccgaccac 52  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||    
T  21649300 ggacaatgcataatatatgtaaggatcgggcttcaaatcccgaccac 21649346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 48159699 - 48159745
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcg-ggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||    
T  48159699 ggacaatgcataatatatgtaaggttcgaagttcaaatcccgaccac 48159745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21318298 - 21318246
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||||| | ||||||||| |||||||||    
T  21318298 tggtagggacaatgcataatatatgcaaggtctagggttcaaaccccgaccac 21318246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22164314 - 22164262
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgaccac 52  Q
    ||||||| ||||||||||||||||||||||| | ||||||||| |||||||||    
T  22164314 tggtaggaacaatgcataatatatgtaaggtctggggttcaaaccccgaccac 22164262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 22411780 - 22411815
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcggg 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  22411780 tggtatggacaatgcataatatatgtaaggttcggg 22411815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36071160 - 36071195
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcggg 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  36071160 tggtaaggacaatgcataatatatgtaaggttcggg 36071195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 23160056 - 23160086
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt 31  Q
    |||||||||||||||||||||||||||||||    
T  23160056 tggtagggacaatgcataatatatgtaaggt 23160086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36479007 - 36479057
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcg-ggttcaaatcccgacc 50  Q
    ||||| |||||||||||||||||||||||||||| ||||| || |||||||    
T  36479007 tggtatggacaatgcataatatatgtaaggttcgaggttcgaaccccgacc 36479057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2587745 - 2587704
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaa 42  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||    
T  2587745 tggtatggataatgcataatatatgtaaggtccgggttcaaa 2587704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6586157 - 6586198
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaa 42  Q
    ||||||| |||||||||| |||||| ||||||||||||||||    
T  6586157 tggtaggaacaatgcatagtatatggaaggttcgggttcaaa 6586198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29228746 - 29228787
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttcgggttcaaa 42  Q
    ||||||||||||| |||||||||||||| ||| |||||||||    
T  29228746 tggtagggacaatccataatatatgtaaagtttgggttcaaa 29228787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 37462133 - 37462178
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||||| ||| ||| || |||||||||    
T  37462133 ggacaatgcataatatatgtaaggtccggattccaaccccgaccac 37462178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 50650966 - 50650925
Alignment:
Q  7 ggacaatgcataatatatgtaaggttc-gggttcaaatcccg 47  Q
    ||||||||||||||||||||||||||| |||||| |||||||    
T  50650966 ggacaatgcataatatatgtaaggttcagggttcgaatcccg 50650925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9028117 - 9028065
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggt-tcgggttcaaatcccgaccac 52  Q
    ||||||||||||||||||| ||||||||||| | |||||| |||||| |||||    
T  9028117 tggtagggacaatgcataaaatatgtaaggtctggggttcgaatcccaaccac 9028065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11949808 - 11949756
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||||||||| ||||| | ||||||||| |||||||||    
T  11949808 tggtatggacaatgcataatatatgcaaggtccggggttcaaaccccgaccac 11949756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14197476 - 14197448
Alignment:
Q  1 tggtagggacaatgcataatatatgtaag 29  Q
    |||||||||||||||||||||||||||||    
T  14197476 tggtagggacaatgcataatatatgtaag 14197448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 17948173 - 17948129
Alignment:
Q  9 acaatgcataatatatgtaaggttcgg-gttcaaatcccgaccac 52  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||||    
T  17948173 acaatgcataaaatatgtaaggttcggagttcaaaccccgaccac 17948129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25999413 - 25999445
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  25999413 tggtagggacaatgcataatatatataaggttc 25999445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 37005556 - 37005516
Alignment:
Q  9 acaatgcataatatatgtaaggttc-gggttcaaatcccga 48  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  37005556 acaatgcataatatatgtaaggttcagggttcgaatcccga 37005516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 50380873 - 50380829
Alignment:
Q  9 acaatgcataatatatgtaaggttcgg-gttcaaatcccgaccac 52  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||    
T  50380873 acaatgcataatatatgtaaggtccggagttcaaatctcgaccac 50380829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 56096226 - 56096262
Alignment:
Q  7 ggacaatgcataatatatgtaaggttcg-ggttcaaa 42  Q
    |||||||||||||||||||||||||||| ||||||||    
T  56096226 ggacaatgcataatatatgtaaggttcgtggttcaaa 56096262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 1103 - 1075
Alignment:
Q  3 gtagggacaatgcataatatatgtaaggt 31  Q
    |||||||||||||||||||||||||||||    
T  1103 gtagggacaatgcataatatatgtaaggt 1075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 161157 - 161209
Alignment:
Q  1 tggtagggacaatgcataatatatgtaaggttc-gggttcaaatcccgaccac 52  Q
    ||||| ||||||||||||| ||||| ||||||| ||||||||| |||||||||    
T  161157 tggtatggacaatgcataaaatatgcaaggttcggggttcaaaccccgaccac 161209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 190010 - 189982
Alignment:
Q  8 gacaatgcataatatatgtaaggttcggg 36  Q
    |||||||||||||||||||||||||||||    
T  190010 gacaatgcataatatatgtaaggttcggg 189982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University