View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17956_low_27 (Length: 214)

Name: NF17956_low_27
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17956_low_27
NF17956_low_27
[»] chr3 (11 HSPs)
chr3 (66-214)||(2768863-2769011)
chr3 (116-210)||(2856056-2856150)
chr3 (116-203)||(2818362-2818449)
chr3 (116-209)||(5412706-5412799)
chr3 (116-210)||(2748796-2748890)
chr3 (116-210)||(2759012-2759106)
chr3 (116-211)||(2838849-2838944)
chr3 (116-214)||(2790161-2790259)
chr3 (116-212)||(2797157-2797253)
chr3 (126-184)||(22648771-22648829)
chr3 (116-208)||(2807070-2807162)
[»] scaffold0691 (1 HSPs)
scaffold0691 (127-214)||(6409-6496)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 7e-48; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 66 - 214
Target Start/End: Complemental strand, 2769011 - 2768863
Alignment:
Q  66 actactgctcctgctgtttgacgatctttgttcctgtgatgcttcgacgctatacatctcgcttctttccttgattccacaaattgacaacttaatgtcc 165  Q
    ||||||| ||||||||||||| |||| |||||| ||||| | ||  | ||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  2769011 actactgttcctgctgtttgaggatccttgttcatgtgaagtttgaaagctatacctctcgcttctttccttgattccacgaattgacaacttaatgtcc 2768912  T
Q  166 tgaatctccgatgcaattttatgacggggagtcaaagttttgattaggc 214  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||    
T  2768911 tgaatctctaatgcaattttatgacggggagtcaaagttttgattaggc 2768863  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 2856056 - 2856150
Alignment:
Q  116 tatacatctcgcttctttccttgattccacaaattgacaacttaatgtcctgaatctccgatgcaattttatgacggggagtcaaagttttgatt 210  Q
    ||||| ||| |||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  2856056 tatacctctggcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgatggggaatcaaagttttgatt 2856150  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 2818449 - 2818362
Alignment:
Q  116 tatacatctcgcttctttccttgattccacaaattgacaacttaatgtcctgaatctccgatgcaattttatgacggggagtcaaagt 203  Q
    ||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||| || |||||||||||||||    
T  2818449 tatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaatttcataacggggagtcaaagt 2818362  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 5412799 - 5412706
Alignment:
Q  116 tatacatctcgcttctttccttgattccacaaattgacaacttaatgtcctgaatctccgatgcaattttatgacggggagtcaaagttttgat 209  Q
    ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || | |||| ||||| |||||||||||||    
T  5412799 tatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctcagatgctatctgatgatggggaatcaaagttttgat 5412706  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 2748890 - 2748796
Alignment:
Q  116 tatacatctcgcttctttccttgattccacaaattgacaacttaatgtcctgaatctccgatgcaattttatgacggggagtcaaagttttgatt 210  Q
    ||||| |||| ||||||||||||||||||| |||||| || |||||||||||||| || ||||| || | |||||||||| ||||||||||||||    
T  2748890 tatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatt 2748796  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 2759106 - 2759012
Alignment:
Q  116 tatacatctcgcttctttccttgattccacaaattgacaacttaatgtcctgaatctccgatgcaattttatgacggggagtcaaagttttgatt 210  Q
    ||||| || |||||||||||||||||||   ||||| || ||| ||||| |||||||| ||||||||||| ||||||||| ||||||||||||||    
T  2759106 tatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgatt 2759012  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 211
Target Start/End: Original strand, 2838849 - 2838944
Alignment:
Q  116 tatacatctcgcttctttccttgattccacaaattgacaacttaatgtcctgaatctccgatgcaattttatgacggggagtcaaagttttgatta 211  Q
    ||||| |||||||||||| |||||||||   | ||| || ||| ||||| |||||||| ||||||||||| ||||||||| |||||||||||||||    
T  2838849 tatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgatta 2838944  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 2790259 - 2790161
Alignment:
Q  116 tatacatctcgcttctttccttgattccacaaattgacaacttaatgtcctgaatctccgatgcaattttatgacggggagtcaaagttttgattaggc 214  Q
    ||||| |||| ||||||||||||||||||| |||||| | ||||||||  | |||||| ||||| || | |||| ||||| ||||||||||||||||||    
T  2790259 tatacctctcacttctttccttgattccacgaattgatatcttaatgtttttaatctcagatgctatctgatgatggggaatcaaagttttgattaggc 2790161  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 2797253 - 2797157
Alignment:
Q  116 tatacatctcgcttctttccttgattccacaaattgacaacttaatgtcctgaatctccgatgcaattttatgacggggagtcaaagttttgattag 212  Q
    ||||| |||| ||||||||||||||||||| |||||| | |||||||| || |||||| ||||| || |  ||| ||| | |||| |||||||||||    
T  2797253 tatacctctcacttctttccttgattccacgaattgatatcttaatgttcttaatctcagatgctatctggtgaagggaaatcaatgttttgattag 2797157  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 22648771 - 22648829
Alignment:
Q  126 gcttctttccttgattccacaaattgacaacttaatgtcctgaatctccgatgcaattt 184  Q
    |||| ||||||||||||||| |||  | ||||||||||| |||||||| ||||||||||    
T  22648771 gcttttttccttgattccacgaataaataacttaatgtcttgaatctcggatgcaattt 22648829  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 2807162 - 2807070
Alignment:
Q  116 tatacatctcgcttctttccttgattccacaaattgacaacttaatgtcctgaatctccgatgcaattttatgacggggagtcaaagttttga 208  Q
    ||||| |||| ||||||||||||||||| | ||  |||| |||||||||  | ||||  ||||| || | |||||||||| ||||||||||||    
T  2807162 tatacctctcacttctttccttgattccgcgaaccgacaccttaatgtctcggatcttagatgctatatgatgacggggaatcaaagttttga 2807070  T

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Target: scaffold0691 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 6409 - 6496
Alignment:
Q  127 cttctttccttgattccacaaattgacaacttaatgtcctgaatctccgatgcaattttatgacggggagtcaaagttttgattaggc 214  Q
    ||||| ||||||||||||| |||||||| ||| |||||||||||||| ||||| || | |||  | | | ||||||||||||||||||    
T  6409 cttctgtccttgattccacgaattgacagctttatgtcctgaatctcagatgctatctgatgctgagaaatcaaagttttgattaggc 6496  T

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