View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17956_low_7 (Length: 532)
Name: NF17956_low_7
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17956_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 2023818 - 2023330
Alignment:
| Q |
18 |
acttgatggaatatgtttacacattttttgttaactaattaatgcaaccatattttcacttttattttatttgtcccacattttgtataggaatgtaacc |
117 |
Q |
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| T |
2023818 |
acttgatggaatatgtttacacattttttgttaactaattaatgcaaccatattttcacttttattttatttgtcccacattttgtataggaatgtaacc |
2023719 |
T |
|
| Q |
118 |
att---tcaaaaaggaaaagtctaatactctattttttaatataattttctcataatactaaatatttttgcaataacaaatgtaggtagcaaagtaaat |
214 |
Q |
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| T |
2023718 |
attatttcaaaaaggaaaagtctaatactctattttttaatataattttctcataatactaaatatttttgcaataacaaatgtaggtagcaaagtaaat |
2023619 |
T |
|
| Q |
215 |
actacaaa-gttattttaattatattgcatacatgttaagccacctttattgtgtgtatcagaaatttcaaatcttgaaatatggcaaaggagaagttcc |
313 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2023618 |
actacaaaagttattttaattatattgcatacatgttaaaccacctttattgtgtgtatcagaaatttccaatcttgaaatatggcaaaggagaagttcc |
2023519 |
T |
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| Q |
314 |
atcaaggcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatacaatggaggcttatcttctgatactaattcctttataggacca |
413 |
Q |
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| T |
2023518 |
atcaaggcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttggaggattatcttctgatactaattcctttataggacca |
2023419 |
T |
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| Q |
414 |
taaagttttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctgtgctc |
502 |
Q |
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| T |
2023418 |
taaagttttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctgtgctc |
2023330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 216 - 502
Target Start/End: Original strand, 1959709 - 1959995
Alignment:
| Q |
216 |
ctacaaagttattttaattatattgcatacatgttaagccacctttattgtgtgtatcagaaatttcaaatcttgaaatatggcaaaggagaagttccat |
315 |
Q |
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|||||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
1959709 |
ctacaaagttatttgaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccat |
1959808 |
T |
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| Q |
316 |
caaggcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatacaatggaggcttatcttctgatactaattcctttataggaccata |
415 |
Q |
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| T |
1959809 |
caaggcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttggaggattatcttctgatactaattcctttataggaccata |
1959908 |
T |
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| Q |
416 |
aagttttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctgtgctc |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1959909 |
aagttttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctgtgctc |
1959995 |
T |
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