View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17956_low_8 (Length: 481)
Name: NF17956_low_8
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17956_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 186 - 472
Target Start/End: Complemental strand, 41710858 - 41710572
Alignment:
| Q |
186 |
tggccggtatggcaggattttggctctccgctattggcaacactgctccttactatagaagaaacctgatcgaaaacccagttagaataagaaaatagat |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41710858 |
tggccggtatggcaggattttggctctccgccattggcaacactgctccttactatagaagaaacctgatcgaaaacccagttagaataggaaaatagat |
41710759 |
T |
|
| Q |
286 |
tataaaatgatacctaccagagactgcaacaagcaggcagtctacaaccaagaccagtgaccattcaggtctgtttctgataggagaccttttgaccttt |
385 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41710758 |
tataaaatgatacctagcagagactgcaacaagcaggcagtctgcaaccaagaccggtgaccattcagatctgtttctgataggagaccttttgaccttt |
41710659 |
T |
|
| Q |
386 |
tttggaaaaggtctatgttaggaggggtaatgtattatgtagagatagaaatgtaactaacagtgcgattcttgttattttcctttg |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41710658 |
tttggaaaaggtctatgttaggaggggtaatgtattatgtagagatagaaatgtaactaacagtgcgattcttgttattttcctttg |
41710572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 41713157 - 41713029
Alignment:
| Q |
9 |
taaatggtcataaatgttgtgtctccataaaaacaaaaatagccattaattcaattcatgacacaatagttttgttaataaaagaatttggacttaaaat |
108 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||||||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41713157 |
taaatgatcataaatgttgtgtctccgtataaacaaaaataaccatcaattcaattcaagacacaatagctttgttaataaaagaatttggacttaaaat |
41713058 |
T |
|
| Q |
109 |
aatattggaaaacaatctttctccctctc |
137 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |
|
|
| T |
41713057 |
aatattgaaaaacaatctttctcactctc |
41713029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 221 - 472
Target Start/End: Original strand, 14109316 - 14109565
Alignment:
| Q |
221 |
ggcaacactgctccttactatagaagaaacctgatcgaaaacc-cagttagaataagaaaatagattataaaatgatacctaccagagactgcaacaagc |
319 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||| | ||| |||| || || ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14109316 |
ggcaacattgctccttactatagaagaaacctgatcaaaaaacacagatagagtaggagaatagattataaaatgatacctagcagagactgcaacaagc |
14109415 |
T |
|
| Q |
320 |
aggcagtctacaaccaagaccagtgaccattcaggtctgtttctgataggagaccttttgaccttttttggaaaaggtctatgttaggaggggtaatgta |
419 |
Q |
| |
|
|| ||||| |||||||| ||| || |||||||| | ||||||| || |||||||||||||| |||| || ||||||||| |||||||||||||||||| |
|
|
| T |
14109416 |
agtgagtcttcaaccaaggccaatggccattcagatatgtttctaattggagaccttttgac-ttttgtgcaaaaggtct--gttaggaggggtaatgta |
14109512 |
T |
|
| Q |
420 |
ttatgtagagatagaaatgtaactaacagtgcgattcttgttattttcctttg |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
14109513 |
ttatgtagagatagaaatgtaactaacagttcaattcttgttattttcctttg |
14109565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 16013254 - 16013296
Alignment:
| Q |
188 |
gccggtatggcaggattttggctctccgctattggcaacactg |
230 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
16013254 |
gccggtatggcgggattttggctctccgccattggcagcactg |
16013296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University