View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17956_low_9 (Length: 446)
Name: NF17956_low_9
Description: NF17956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17956_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 35004574 - 35004154
Alignment:
| Q |
18 |
caaacgtggtacaagatgaaccttcaccaaacaattggccggtaaatgnnnnnnnttattcatgacattttgtatcattgccatataaggagtaattttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||| ||||||||||||||| |
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| T |
35004574 |
caaacgtggtacaagatgaaccttcaccaaacaattggccggtaaatgaaaaaaattattcatggcattttgtttcattaccatgtaaggagtaattttc |
35004475 |
T |
|
| Q |
118 |
acaatgtttgtgtcatttgtacttcaaaacgcgacattgtatgtgaggcacatacatgtttttctctatctttcattcactttttatcttctacaactta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35004474 |
acaatgtttgtgtcatttgtacttcaaaacgcgacattgtatgtgaggcacatacatgtttttctctatctttcattcactttttatattctacaactta |
35004375 |
T |
|
| Q |
218 |
cttgcatttcaaaaataaacacatttagattgtgatgctagttttcctctgatatttgttagatagactctcgaaatttggaagcatccaaatagtgaca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35004374 |
cttgcatttcaaaaataaacacatttagattgtgatgctagttttcctctgatgtttgttagatagactctcgaaatttggaagcatccaaacagtgaca |
35004275 |
T |
|
| Q |
318 |
actatttcaattgcatgggacgagcaaagaaagatatacgtgcgtccaaattaagctctttactgctcaannnnnnnnnagtaaaatttgatataagtga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35004274 |
actatttcaattgcatgggacgagcaaagaaagatatacgtgcgtccaaattaagctctttactgctcaatttttttttagtaaaatttgatataagtga |
35004175 |
T |
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| Q |
418 |
ttcacactctatcattcatct |
438 |
Q |
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||||||||||||||||||||| |
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| T |
35004174 |
ttcacactctatcattcatct |
35004154 |
T |
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