View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17957_low_1 (Length: 485)
Name: NF17957_low_1
Description: NF17957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17957_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Original strand, 218930 - 219387
Alignment:
| Q |
13 |
acgaacaagataacacaacatgtaatctttcacatgaagagttagaagaaatcaaaaagcttcattcaagtgacacaaacattgacaaagaaaaagattc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
218930 |
acgaacaagataacacaacatgtaatctttcacatgaagagttagaagaaatcaaaaagcttcattcaagtgacacaaacattgacaaagaaaaagattc |
219029 |
T |
|
| Q |
113 |
aattgaattagtcttagcaaagctttgtcttgaaagaaacattccttacttaggaatttgtagaggttcacaagtccttaatgttgcatgtggaggtacc |
212 |
Q |
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| T |
219030 |
aattgaattaatcttagcaaagctttgtcttgaaagaaacattccttacttaggaatttgtagaggttcacaagtccttaatgttgcatgtggaggtacc |
219129 |
T |
|
| Q |
213 |
ctttatagggacgtatcaaaagagctttcaaaaaatagccatgtgatgcatataaactatgatgattatgatggtcatagacatgttattaaggttgtta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219130 |
ctttatagggacgtatcaaaagagctttcaaaaaatagccatgtgatgcatataaactatgatgattatgatggtcatagacatgttattaaggttgtta |
219229 |
T |
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| Q |
313 |
aaaacacacctttgtttgattggtttaaggattctttgaaaaatgaaggaatggatgagattttggttaatagctatcatcatcaaggggttaagagatt |
412 |
Q |
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| T |
219230 |
aaaacacacctttgtttgattggtttaaggattctttgaaaaatgaaggaatggatgagattttggttaatagctatcatcatcaaggggttaagagatt |
219329 |
T |
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| Q |
413 |
ggcacaacgttttgttccaatggcttttgctaatgatggtttaattgaagggttttat |
470 |
Q |
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| T |
219330 |
ggcacaacgttttgttccaatggcttttgctaatgatggtttaattgaagggttttat |
219387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 255 - 470
Target Start/End: Complemental strand, 31652031 - 31651819
Alignment:
| Q |
255 |
gtgatgcatataaactatgatgattatgatggtcatagacatgttattaaggttgttaaaaacacacctttgtttgattggtttaaggattctttgaaaa |
354 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| | || |||||| |||| ||||||||| | |||||||||||||||||||| || |
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| T |
31652031 |
gtgatgcatattaactatgatgattatgatggtcatagacatgaggtaaaagttgttgaaaatacacctttgcatcattggtttaaggattctttggaag |
31651932 |
T |
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| Q |
355 |
atgaaggaatggatgagattttggttaatagctatcatcatcaaggggttaagagattggcacaacgttttgttccaatggcttttgctaatgatggttt |
454 |
Q |
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| T |
31651931 |
atgataaaatggac---attttggttaatagctatcatcatcaaggtgttaagagacttgcacagcgttttgttccaatggcttttgctcctgatggttt |
31651835 |
T |
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| Q |
455 |
aattgaagggttttat |
470 |
Q |
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||||||||||||||| |
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| T |
31651834 |
gattgaagggttttat |
31651819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 31652208 - 31652090
Alignment:
| Q |
93 |
attgacaaagaaaaagattcaattgaattagtcttagcaaagctttgtcttgaaagaaacattccttacttaggaatttgtagaggttcacaagtcctta |
192 |
Q |
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||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||| | |
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| T |
31652208 |
attgacaaagaaaaagattcaattgaattagcactagccaaactttgtcttgaaagaaatattccttacttgggaatttgtagagggtcacaactcctaa |
31652109 |
T |
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| Q |
193 |
atgttgcatgtggaggtac |
211 |
Q |
| |
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|||| |||||||||||||| |
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| T |
31652108 |
atgtggcatgtggaggtac |
31652090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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