View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17958_high_2 (Length: 431)

Name: NF17958_high_2
Description: NF17958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17958_high_2
NF17958_high_2
[»] chr1 (6 HSPs)
chr1 (147-426)||(46821802-46822081)
chr1 (179-418)||(46828134-46828373)
chr1 (90-145)||(45970002-45970057)
chr1 (94-157)||(38459399-38459461)
chr1 (96-146)||(26853111-26853161)
chr1 (94-146)||(38460695-38460746)
[»] chr6 (8 HSPs)
chr6 (23-151)||(25054515-25054643)
chr6 (23-146)||(30780345-30780468)
chr6 (23-146)||(3962614-3962737)
chr6 (23-146)||(17193740-17193863)
chr6 (94-147)||(17193887-17193940)
chr6 (94-147)||(25054438-25054491)
chr6 (94-147)||(30780268-30780321)
chr6 (94-146)||(3962538-3962590)
[»] chr3 (5 HSPs)
chr3 (23-145)||(34630664-34630786)
chr3 (23-146)||(46905406-46905526)
chr3 (94-147)||(34630588-34630641)
chr3 (96-146)||(22899519-22899569)
chr3 (94-146)||(46906267-46906319)
[»] chr5 (11 HSPs)
chr5 (23-151)||(17534540-17534668)
chr5 (23-146)||(11772817-11772940)
chr5 (74-147)||(8881021-8881094)
chr5 (94-151)||(17534692-17534749)
chr5 (94-146)||(11772741-11772793)
chr5 (104-149)||(8881095-8881140)
chr5 (113-152)||(244229-244268)
chr5 (117-147)||(11772956-11772986)
chr5 (96-146)||(43514489-43514539)
chr5 (113-146)||(245988-246021)
chr5 (96-149)||(43513815-43513868)
[»] chr4 (5 HSPs)
chr4 (23-143)||(51268401-51268521)
chr4 (94-146)||(51268324-51268376)
chr4 (96-146)||(29337158-29337208)
chr4 (96-146)||(44891723-44891773)
chr4 (110-142)||(12157302-12157334)
[»] chr8 (8 HSPs)
chr8 (23-146)||(10756526-10756649)
chr8 (23-146)||(29739985-29740108)
chr8 (94-148)||(29739907-29739961)
chr8 (94-146)||(10756450-10756502)
chr8 (90-143)||(11128887-11128940)
chr8 (110-146)||(27887565-27887601)
chr8 (110-146)||(27946223-27946259)
chr8 (110-146)||(28026466-28026502)
[»] chr7 (2 HSPs)
chr7 (23-108)||(43405484-43405569)
chr7 (94-146)||(43406316-43406368)
[»] chr2 (3 HSPs)
chr2 (90-148)||(18900622-18900680)
chr2 (96-147)||(45627809-45627860)
chr2 (96-147)||(44995643-44995694)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 147 - 426
Target Start/End: Original strand, 46821802 - 46822081
Alignment:
Q  147 taaatttaaatatgtggatattcttaaaaccgtgaataagtgtgacatcacaatattgttctcatcccaaaaatttctcatacattgatttccaatttcc 246  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46821802 taaatttaaatatgtggatatactcaaaaccgtgaataagtgtgacatcacaatattgttctcatcccaaaaatttctcatacattgatttccaatttcc 46821901  T
Q  247 aaagacaacatatcaagtttaggaacacgtagttcttcttgtcttgagtaaaattttcaaaatcttattttagctagaagacacagttccctcgatttca 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46821902 aaagacaacatatcaagtttaggaacacgtagttcttcttgtcttaagtaaaattttcaaaatcttattttagctagaagacacagttccctcgatttca 46822001  T
Q  347 agctaaaggttgagtcatccacataatcaactcgagtggaactttttatgtgcaatttaatttcatagacctatgcttct 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  46822002 agctaaaggttgagtcatccacataatcaactcgagtggaactttttatgtgcaatttaatttcatagacttatggttct 46822081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 179 - 418
Target Start/End: Original strand, 46828134 - 46828373
Alignment:
Q  179 tgaataagtgtgacatcacaatattgttctcatcccaaaaatttctcatacattgatttccaatttccaaagacaacatatcaagtttaggaacacgtag 278  Q
    |||| |||||||||||||||||||||||  |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||     
T  46828134 tgaaaaagtgtgacatcacaatattgtttccatcccaaaaatttatcatgcattgatttccaatttccaaagacaacatatcaagtttagcaacacgtat 46828233  T
Q  279 ttcttcttgtcttgagtaaaattttcaaaatcttattttagctagaagacacagttccctcgatttcaagctaaaggttgagtcatccacataatcaact 378  Q
    ||||||||||||| | |||| |||||||| |||  || ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  46828234 ttcttcttgtcttaattaaatttttcaaactctcgttctagctggaagacacagttccctcaatttcatgctaaaggttgagtcatccacataatcaact 46828333  T
Q  379 cgagtggaactttttatgtgcaatttaatttcatagacct 418  Q
    |||||| || |||| |||||||||||||||||||||||||    
T  46828334 cgagtgaaatttttcatgtgcaatttaatttcatagacct 46828373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 45970057 - 45970002
Alignment:
Q  90 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 145  Q
    ||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  45970057 catgtcattggagagtgttaaaagagtgtgtttgagagtgtgtccttagcatttct 45970002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 38459461 - 38459399
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaaatttaaat 157  Q
    ||||||||||||||| |||||||||||| | |||| ||||| |||||||||||||  |||||||    
T  38459461 ttattggagtgtgtt-aaagagtgtgttagggagtgtgtccctagcatttctctaggtttaaat 38459399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 26853111 - 26853161
Alignment:
Q  96 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  26853111 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 26853161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 38460695 - 38460746
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    ||||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  38460695 ttattggagtgtgtt-aaagagtgtgttagggagtgtgtccctagcatttctc 38460746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 7e-62; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 25054515 - 25054643
Alignment:
Q  23 tttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 122  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25054515 tttaatacatttcaatttcatattaggttgtcagttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 25054614  T
Q  123 gagagtttgtccttagcatttctctaaat 151  Q
    |||||||||||||||||||||||||||||    
T  25054615 gagagtttgtccttagcatttctctaaat 25054643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 30780345 - 30780468
Alignment:
Q  23 tttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 122  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30780345 tttaatacatttcaatttcatattaggttgtcggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 30780444  T
Q  123 gagagtttgtccttagcatttctc 146  Q
    ||||||||||||||||||||||||    
T  30780445 gagagtttgtccttagcatttctc 30780468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 3962614 - 3962737
Alignment:
Q  23 tttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 122  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3962614 tttaatacatttcaatttcatattaggttgtcggttaattaaacaaaggatggagatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 3962713  T
Q  123 gagagtttgtccttagcatttctc 146  Q
    ||||||||||||||||||||||||    
T  3962714 gagagtttgtccttagcatttctc 3962737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 17193863 - 17193740
Alignment:
Q  23 tttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 122  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17193863 tttaatacatttcaatttcatattaggttgtcggttaattaaacaaaggatggggatgatgtgtcaacatattattggagtgtgttgaaagagtgtgttt 17193764  T
Q  123 gagagtttgtccttagcatttctc 146  Q
    ||||||||||||||||||||||||    
T  17193763 gagagtttgtccttagcatttctc 17193740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 17193887 - 17193940
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17193887 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 17193940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 25054491 - 25054438
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25054491 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 25054438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 30780321 - 30780268
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30780321 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 30780268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 3962590 - 3962538
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3962590 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 3962538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 34630664 - 34630786
Alignment:
Q  23 tttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 122  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34630664 tttaatacatttcaatttcatattaggttgtcggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 34630763  T
Q  123 gagagtttgtccttagcatttct 145  Q
    |||||||||||||||||||||||    
T  34630764 gagagtttgtccttagcatttct 34630786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 46905526 - 46905406
Alignment:
Q  23 tttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 122  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   | |||||||||||||||||||||||||||| ||||||||    
T  46905526 tttaatacatttcaatttcatatcaggttgccggttaattaaacaaaggatggggatg---tatcaacatgttattggagtgtgttgaaagtgtgtgttt 46905430  T
Q  123 gagagtttgtccttagcatttctc 146  Q
    |||||||| |||||||||||||||    
T  46905429 gagagtttatccttagcatttctc 46905406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 34630641 - 34630588
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34630641 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 34630588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 22899519 - 22899569
Alignment:
Q  96 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22899519 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 22899569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 46906267 - 46906319
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  46906267 ttattggagtgtgtaaaaagagtgtgtttgagggtttgtccttagcatttctc 46906319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 17534668 - 17534540
Alignment:
Q  23 tttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 122  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17534668 tttaatacatttcaatttcatattaggttgttggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 17534569  T
Q  123 gagagtttgtccttagcatttctctaaat 151  Q
    |||||||||||||||||||||||| ||||    
T  17534568 gagagtttgtccttagcatttctcaaaat 17534540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 11772817 - 11772940
Alignment:
Q  23 tttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 122  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772817 tttaatacatttcaatttcatattaggttgttggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 11772916  T
Q  123 gagagtttgtccttagcatttctc 146  Q
    ||||||||||||||||||||||||    
T  11772917 gagagtttgtccttagcatttctc 11772940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 8881094 - 8881021
Alignment:
Q  74 ggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8881094 ggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 8881021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 17534692 - 17534749
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaaat 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17534692 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcaaaat 17534749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 11772793 - 11772741
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772793 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 11772741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 8881095 - 8881140
Alignment:
Q  104 gtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaa 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8881095 gtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaa 8881140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 244268 - 244229
Alignment:
Q  113 gagtgtgtttgagagtttgtccttagcatttctctaaatt 152  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  244268 gagtgtgtttgagagtttgtccgtagcatttctctcaatt 244229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 147
Target Start/End: Original strand, 11772956 - 11772986
Alignment:
Q  117 gtgtttgagagtttgtccttagcatttctct 147  Q
    |||||||||||||||||||||||||||||||    
T  11772956 gtgtttgagagtttgtccttagcatttctct 11772986  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 43514489 - 43514539
Alignment:
Q  96 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  43514489 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 43514539  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 245988 - 246021
Alignment:
Q  113 gagtgtgtttgagagtttgtccttagcatttctc 146  Q
    |||||||||||||||||||||| |||||||||||    
T  245988 gagtgtgtttgagagtttgtccatagcatttctc 246021  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 43513868 - 43513815
Alignment:
Q  96 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaa 149  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||| |||||    
T  43513868 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttatctaa 43513815  T

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Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 51268401 - 51268521
Alignment:
Q  23 tttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 122  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51268401 tttaatacatttcaatttcatattaggttgtcggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 51268500  T
Q  123 gagagtttgtccttagcattt 143  Q
    |||||||||||||||||||||    
T  51268501 gagagtttgtccttagcattt 51268521  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 51268376 - 51268324
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51268376 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 51268324  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 29337208 - 29337158
Alignment:
Q  96 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    ||||| ||||||| |||||||||||| |||||| ||||| |||||||||||    
T  29337208 attggtgtgtgttaaaagagtgtgttagagagtgtgtccctagcatttctc 29337158  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 44891773 - 44891723
Alignment:
Q  96 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  44891773 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 44891723  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 12157302 - 12157334
Alignment:
Q  110 aaagagtgtgtttgagagtttgtccttagcatt 142  Q
    |||||||||||| ||||||||||||||||||||    
T  12157302 aaagagtgtgttagagagtttgtccttagcatt 12157334  T

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Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 10756526 - 10756649
Alignment:
Q  23 tttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 122  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10756526 tttaatacatttcaatttcatattaggttgtcagttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 10756625  T
Q  123 gagagtttgtccttagcatttctc 146  Q
    ||||||||||||||||||||||||    
T  10756626 gagagtttgtccttagcatttctc 10756649  T

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Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 29739985 - 29740108
Alignment:
Q  23 tttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 122  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29739985 tttaatacatttcaatttcatattaggttgtcagttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgttt 29740084  T
Q  123 gagagtttgtccttagcatttctc 146  Q
    ||||||||||||||||||||||||    
T  29740085 gagagtttgtccttagcatttctc 29740108  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 29739961 - 29739907
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29739961 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 29739907  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 10756502 - 10756450
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10756502 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 10756450  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 11128887 - 11128940
Alignment:
Q  90 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 143  Q
    ||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  11128887 catgtcattggagggtgttaaaagagtgtgtttgagagtgtgtccttagcattt 11128940  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 27887565 - 27887601
Alignment:
Q  110 aaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    |||||||||| | ||||||||||||||||||||||||    
T  27887565 aaagagtgtgatagagagtttgtccttagcatttctc 27887601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 27946223 - 27946259
Alignment:
Q  110 aaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    |||||||||| | ||||||||||||||||||||||||    
T  27946223 aaagagtgtgatagagagtttgtccttagcatttctc 27946259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 28026466 - 28026502
Alignment:
Q  110 aaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    |||||||||| | ||||||||||||||||||||||||    
T  28026466 aaagagtgtgatagagagtttgtccttagcatttctc 28026502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 43405569 - 43405484
Alignment:
Q  23 tttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgtt 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43405569 tttaatacatttcaatttcatatcaggttgccggttaattaaacaaaggatggggatgacgtgtcaacatgttattggagtgtgtt 43405484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 43406316 - 43406368
Alignment:
Q  94 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 146  Q
    ||||||||||||||  |||||||||||||||| |||| |||||||||||||||    
T  43406316 ttattggagtgtgtcaaaagagtgtgtttgagggtttatccttagcatttctc 43406368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 18900680 - 18900622
Alignment:
Q  90 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 148  Q
    ||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||    
T  18900680 catgtcattggagagtgttaaaagagtgtgtttgagagtgtgtccttagcatttctcta 18900622  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 45627860 - 45627809
Alignment:
Q  96 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 147  Q
    ||||||||||||| |||||||||||| | |||||||||| ||||||||||||    
T  45627860 attggagtgtgttaaaagagtgtgttagggagtttgtccctagcatttctct 45627809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 44995694 - 44995643
Alignment:
Q  96 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 147  Q
    ||||||||||||| ||||||| |||| |||||||||||| | ||||||||||    
T  44995694 attggagtgtgttaaaagagtatgttagagagtttgtccctggcatttctct 44995643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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