View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17958_low_1 (Length: 477)
Name: NF17958_low_1
Description: NF17958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17958_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 54642451 - 54642006
Alignment:
| Q |
19 |
ggaattaagttaaaacttaaaagtgtatgacgtaaactgaatcaagaacaagaaacaaagaaaatgcaatctaggaaaatagtgaatgatggtttagtcg |
118 |
Q |
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| T |
54642451 |
ggaattaagttaaaacttaaaagtgtatgacgtaaactgaatcaagaacaagaaacaaagaaaatgcaatctaggaaaatagtgaatgatggtttagtcg |
54642352 |
T |
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| Q |
119 |
ctgagaagaaggaagataataatgatcagaacgtgcacgttgattctgccactgcccttcaacaatttcttgatcacatacccattagttcaatatccgg |
218 |
Q |
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| T |
54642351 |
ctgagaagaaggaagataataatgatcagaacgtgcatgttgattctgccactgcccttcaacaatttcttgatcacatacccattagttcaatatccgg |
54642252 |
T |
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| Q |
219 |
cataaacaattcacatggtactactactactttttacaattagtttgttaacattgttttgtgattcaatgccctccaacgttgttttcttccttcctat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54642251 |
cataaacaattcacatggtactactactactttttacaattagtttgttaacattgttttgtgattcaatgccctccaacgttgttttcttccttcctat |
54642152 |
T |
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| Q |
319 |
gttaagtgttggaaataaaatctggaggcactataagggatgcaattcatatgttgtacgaaaaggacacatttggtgctgtcattgtggatgttttgaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54642151 |
gttaagtgttggaaataaaatctggaggcactataagggatgcaattcatatgttgtacgaaaaggacacatttggtgctgtcattgtggatgttttgaa |
54642052 |
T |
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| Q |
419 |
caccgaaacatcaagcataaggttttctgatcgctatattggtttc |
464 |
Q |
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| T |
54642051 |
cactgaaacatcaagcataaggttttctgatcgctatattggtttc |
54642006 |
T |
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