View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17958_low_3 (Length: 327)
Name: NF17958_low_3
Description: NF17958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17958_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 16576204 - 16575910
Alignment:
| Q |
18 |
gtgtttaccgaataaaatgctctaatattttattggtgtagatatattttactcatttctccaaagatcttcaggaagaagccaattattattggccaac |
117 |
Q |
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| T |
16576204 |
gtgtttaccgaataaaatgctctaatattttattggtgtagatatattttactcatttctccaaagatcttcaggaagaagccaattattattggccaac |
16576105 |
T |
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| Q |
118 |
caacgaacacaacttgaagcaaaagcaaaagcaaaggagagaaatatttgttaataaaatgaaagagaaagtgtaagcttctttacgacaatacaattct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16576104 |
caacgaacacaacttgaagcaaaagcaaaagcaaaggagagaaatatttataaataaaatgaaagagaaagtgtaagcttctttacgacaatacaattct |
16576005 |
T |
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| Q |
218 |
tttgccaatctttacgaccatgcataaaatacagttacatgataaatttcaagatatattctggggacaaagattgcaacctttatttcctcaat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16576004 |
tttgccaatctttacgaccatgcataaaatacagttacacgataaatttcaagatatattctggggacaaagattgcaacctttatttcctcaat |
16575910 |
T |
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