View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17958_low_4 (Length: 216)

Name: NF17958_low_4
Description: NF17958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17958_low_4
NF17958_low_4
[»] chr3 (3 HSPs)
chr3 (17-65)||(33772099-33772147)
chr3 (130-175)||(33771989-33772034)
chr3 (141-173)||(2829761-2829793)
[»] chr6 (1 HSPs)
chr6 (6-65)||(2315687-2315747)
[»] chr5 (1 HSPs)
chr5 (33-65)||(15476505-15476537)
[»] chr4 (2 HSPs)
chr4 (33-65)||(32385058-32385090)
chr4 (37-65)||(33626114-33626142)
[»] chr1 (1 HSPs)
chr1 (37-65)||(28970527-28970555)


Alignment Details
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 33772147 - 33772099
Alignment:
Q  17 gaagatgaagatcgccaacattttttaattaaaactaacggaaaagacc 65  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33772147 gaagatgaagaacgccaacattttttaattaaaactaacggaaaagacc 33772099  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 33772034 - 33771989
Alignment:
Q  130 gcaacactgattaaatagttaaggatcaaaaacgcaatttagccga 175  Q
    |||| ||| ||||||||||||||||||||||| |||||||||||||    
T  33772034 gcaatactaattaaatagttaaggatcaaaaatgcaatttagccga 33771989  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 2829761 - 2829793
Alignment:
Q  141 taaatagttaaggatcaaaaacgcaatttagcc 173  Q
    ||||||||||||||||||||| |||||||||||    
T  2829761 taaatagttaaggatcaaaaatgcaatttagcc 2829793  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 2315747 - 2315687
Alignment:
Q  6 atgaagatgaagaagatgaagatcgcc-aacattttttaattaaaactaacggaaaagacc 65  Q
    ||||||||||||||||||||||   || ||| ||||| |||||||||||||||||| ||||    
T  2315747 atgaagatgaagaagatgaagaaaaccaaacgtttttgaattaaaactaacggaaaggacc 2315687  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 15476505 - 15476537
Alignment:
Q  33 aacattttttaattaaaactaacggaaaagacc 65  Q
    ||||||||| |||||||||||||||||||||||    
T  15476505 aacatttttgaattaaaactaacggaaaagacc 15476537  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 32385058 - 32385090
Alignment:
Q  33 aacattttttaattaaaactaacggaaaagacc 65  Q
    |||||||||||||||||||||||||||| ||||    
T  32385058 aacattttttaattaaaactaacggaaaggacc 32385090  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 33626114 - 33626142
Alignment:
Q  37 ttttttaattaaaactaacggaaaagacc 65  Q
    |||||||||||||||||||||||||||||    
T  33626114 ttttttaattaaaactaacggaaaagacc 33626142  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 28970555 - 28970527
Alignment:
Q  37 ttttttaattaaaactaacggaaaagacc 65  Q
    |||||||||||||||||||||||||||||    
T  28970555 ttttttaattaaaactaacggaaaagacc 28970527  T

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