View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17958_low_5 (Length: 210)
Name: NF17958_low_5
Description: NF17958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17958_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 158590 - 158394
Alignment:
| Q |
1 |
aaactatctagcaacattctttaagacgcaaaatcacattttgtttaaatattgaccaccaaacatattttcttgaggatatcctaatccaagcacacac |
100 |
Q |
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| T |
158590 |
aaactatctagcaacattctttaagacgcaaaatcacattttgtttaaatattgaccaccaaacatattttcttgaggatatcctaatccaagcacacac |
158491 |
T |
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| Q |
101 |
ccacaaatcgtcccccacaaaagaaaacacaaggctcaaattatccttattccacaatgaaaaaaccccactgttatgtcatgctaaaggtagaaac |
197 |
Q |
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| T |
158490 |
ccacaaatcgtcccccacaaaagaaaacacaaggctcaaattatccttattccacaatgaaaaaaccccactgttgtgtcatgctaaaggtagaaac |
158394 |
T |
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