View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_high_10 (Length: 457)
Name: NF17959_high_10
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 51865650 - 51865222
Alignment:
| Q |
18 |
acatattaaaagcaactttgtagcacacatcttcccaaattaatctatgtttatgtagaaacaagacttttaattatttttattttgagaggaacannnn |
117 |
Q |
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| T |
51865650 |
acatattaaaagcaactttgtagcacacatcttcccaaattaatctatgtttatgtagaaacaagacttttaattatttttattttgagaggaacgtttt |
51865551 |
T |
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| Q |
118 |
nnncttaatctcccacacaacttttctcacattgatgaaattatataatatattcttgcttgcgccattgaagatggagcaacagtttcccataatcagg |
217 |
Q |
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| T |
51865550 |
tttcttaatctcccacacaacttttctcacattgatgaaattatataatatattcttgcttgcgccattgaagatggagcaacagtttcccataatcagg |
51865451 |
T |
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| Q |
218 |
aagattttgtttaatcaaaggaacttgtttaaaatttagaatccatgcatgcaacctaggaaatttgtctgcctcgatcaatttcatcccaacaatttcc |
317 |
Q |
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| T |
51865450 |
aagattttgtttaatcaaaggaacttgtttaaaatttagaatccatgcatgcaacctaggaaatttgtctgcctcgatcaatttcatcccaacaatttcc |
51865351 |
T |
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| Q |
318 |
tccaacccttctaaccaatgactaaggcatccatatgtaatgtccaccattccaatactattgcctccaaaaaacttcttctctcctagcccttgcttgt |
417 |
Q |
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| T |
51865350 |
tccaacccttctaaccaatgactaaggcatccatatgtaatgtccaccattccaatattattgcctccaaaaaacttcttctctcctagcccttgcttgt |
51865251 |
T |
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| Q |
418 |
ccattatttcgagtgtttcttgtgccttt |
446 |
Q |
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| T |
51865250 |
ccattatttcgagtgtttcttgtgccttt |
51865222 |
T |
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