View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_high_12 (Length: 368)
Name: NF17959_high_12
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 99 - 361
Target Start/End: Complemental strand, 8546913 - 8546639
Alignment:
| Q |
99 |
agagcaaaacacataagattgtttcgattaaacataaaatcagaacagtgatcagagaaaagaagaaaaaacaccttgggtcggattggagaattgcaaa |
198 |
Q |
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| T |
8546913 |
agagcaaaacacataagattgtttcgattaaacataaaatcagaacagtgatcagagaaaagaagaaaaaacaccttgggtcggattggagaattgcaaa |
8546814 |
T |
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| Q |
199 |
cgcagggagcgtgcgttggtagaattgtttgcgagaaaggaaataagagtgcaaagggtttgactttagacccaaatttaatctataaagaaaatttaaa |
298 |
Q |
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| T |
8546813 |
cgcagggagcgtgcgttggtagaattgtttgcgagaaaggaaataagagggcaaagggtttgactttagacccaaatttaatctataaagaaaatttaaa |
8546714 |
T |
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| Q |
299 |
ccaa------------ttaatatgttaatgagtttcatcaaattgttaaggataatttgattttgattttcttgg |
361 |
Q |
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| T |
8546713 |
ccaatcaaattgtaggttaatatgttaatgagtttcatcaaattgttaaggatagtttgattttgattttattgg |
8546639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8547011 - 8546971
Alignment:
| Q |
1 |
caattgaatccttttttcttttcatggctacacttaattgc |
41 |
Q |
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| T |
8547011 |
caattgaatccttttttcttttcatggctacacttaattgc |
8546971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 8638119 - 8638157
Alignment:
| Q |
3 |
attgaatccttttttcttttcatggctacacttaattgc |
41 |
Q |
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| T |
8638119 |
attgaacccttttttcttttcatggctacactgaattgc |
8638157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 1581689 - 1581745
Alignment:
| Q |
238 |
gaaataagagtgcaaagggtttgactttagacccaaatttaatctataaagaaaattt |
295 |
Q |
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| T |
1581689 |
gaaataagagggcaa-gggtttgactctatacccaaatttcatttataaagaaaattt |
1581745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 1603126 - 1603070
Alignment:
| Q |
238 |
gaaataagagtgcaaagggtttgactttagacccaaatttaatctataaagaaaattt |
295 |
Q |
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| T |
1603126 |
gaaataagagggcaa-gggtttgactctatacccaaatttcatttataaagaaaattt |
1603070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 8546492 - 8546464
Alignment:
| Q |
264 |
ttagacccaaatttaatctataaagaaaa |
292 |
Q |
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| T |
8546492 |
ttagacccaaatttaatctataaagaaaa |
8546464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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