View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17959_high_13 (Length: 353)

Name: NF17959_high_13
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17959_high_13
NF17959_high_13
[»] chr8 (4 HSPs)
chr8 (18-232)||(41375621-41375835)
chr8 (247-337)||(41375498-41375588)
chr8 (261-320)||(10621383-10621442)
chr8 (247-317)||(30659984-30660054)
[»] chr7 (3 HSPs)
chr7 (247-320)||(44662457-44662530)
chr7 (247-317)||(46195949-46196019)
chr7 (248-320)||(6548707-6548778)
[»] chr2 (3 HSPs)
chr2 (247-320)||(24202178-24202251)
chr2 (248-288)||(38790090-38790130)
chr2 (274-311)||(40473543-40473580)
[»] chr6 (1 HSPs)
chr6 (259-311)||(7234002-7234054)
[»] chr3 (3 HSPs)
chr3 (249-320)||(9489505-9489576)
chr3 (261-311)||(27394544-27394594)
chr3 (259-311)||(40160772-40160824)
[»] chr1 (1 HSPs)
chr1 (264-320)||(32660858-32660914)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 41375835 - 41375621
Alignment:
Q  18 gatatgttcttcttctttggcatgaacagattcccaaccaggacgaaaatggatgaaaactgcaatatctatttgacagacgaggacgagaactcgatga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41375835 gatatgttcttcttctttggcatgaacagattcccaaccaggacgaaaatggattaaaactgcaatatctatttgacagacgaggacgagaactcgatga 41375736  T
Q  118 agatgagtgaaaggaagggaaagactagtatctgatttcttgtgttaggggtttaaattnnnnnnnnnnnnnnnctaaatctaaactgttaattaaattc 217  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||               |||||||||||||||||||||||| |    
T  41375735 agatgagtgaaaggaaggggaagactaggttctgatttcttgtgttaggggtttaaattaaaaaatgaaaaaaactaaatctaaactgttaattaaatcc 41375636  T
Q  218 gacggctcatgttaa 232  Q
    |||||||||||||||    
T  41375635 gacggctcatgttaa 41375621  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 337
Target Start/End: Complemental strand, 41375588 - 41375498
Alignment:
Q  247 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgcaaatgaactaagctcaca 337  Q
    |||||||||| | |||||||||||||||||| ||||||||   ||||||||| | ||||| |||||||||| ||| ||| |||||||||||    
T  41375588 tggagaaattcactttaaaggtgaaatagtgaggtgtccggagttcaaaccccaacccctacatacataatacaagtgagctaagctcaca 41375498  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 10621383 - 10621442
Alignment:
Q  261 ttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 320  Q
    |||||||||||| | ||||||||||| | |||||||||   |||||||||||||||||||    
T  10621383 ttaaaggtgaaaaaatggggtgtccggggttcaaaccctgacccctgcatacataatgca 10621442  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 30660054 - 30659984
Alignment:
Q  247 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataat 317  Q
    |||| |||||||  |||||||||||||||||||||||||| | ||  |||||   ||||||||||||||||    
T  30660054 tggaaaaatttaccttaaaggtgaaatagtggggtgtccggggtttgaaccccgacccctgcatacataat 30659984  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 44662457 - 44662530
Alignment:
Q  247 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 320  Q
    |||||||||| |  |||||||||||||||||||||||||| | ||| |||||  ||||||||||||||||||||    
T  44662457 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcgaaccccggcccctgcatacataatgca 44662530  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 46196019 - 46195949
Alignment:
Q  247 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataat 317  Q
    |||||||||| |  |||||||||||||||||||||||||| | |||||||||   ||||||||||||||||    
T  46196019 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcaaaccccgacccctgcatacataat 46195949  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 6548707 - 6548778
Alignment:
Q  248 ggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 320  Q
    ||||||||| |  ||||||||||||||||||||||||||   ||| |||||  | ||||||||||||||||||    
T  6548707 ggagaaattcaccttaaaggtgaaatagtggggtgtccggagttcgaaccc-cggccctgcatacataatgca 6548778  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 24202251 - 24202178
Alignment:
Q  247 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 320  Q
    |||||||||| |  |||||||||||||||||||||||||| | ||| |||||  ||||||||||||||||||||    
T  24202251 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcgaaccccggcccctgcatacataatgca 24202178  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 38790090 - 38790130
Alignment:
Q  248 ggagaaatttattttaaaggtgaaatagtggggtgtccgag 288  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  38790090 ggagaaattcatcttaaaggtgaaatagtggggtgtccgag 38790130  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 40473543 - 40473580
Alignment:
Q  274 agtggggtgtccgagattcaaacccaagcccctgcata 311  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  40473543 agtggggtgtccgaggttcaaaccccagcccctgcata 40473580  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 7234054 - 7234002
Alignment:
Q  259 ttttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 311  Q
    |||| ||||||||  ||||||||||||||| ||||||||| ||||||||||||    
T  7234054 ttttcaaggtgaataagtggggtgtccgaggttcaaaccccagcccctgcata 7234002  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 320
Target Start/End: Complemental strand, 9489576 - 9489505
Alignment:
Q  249 gagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 320  Q
    |||||||| || |||||||||||||||| |||| |||  | ||| |||||  ||||||||||||||||||||    
T  9489576 gagaaattcatcttaaaggtgaaatagtagggtatccagggttcgaaccccggcccctgcatacataatgca 9489505  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 27394594 - 27394544
Alignment:
Q  261 ttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 311  Q
    |||||||||||  ||||||||||||| | ||||||||| ||||||||||||    
T  27394594 ttaaaggtgaataagtggggtgtccggggttcaaaccccagcccctgcata 27394544  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 40160824 - 40160772
Alignment:
Q  259 ttttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 311  Q
    |||||||||||||  ||||||||||||| | ||||||||| |||||| |||||    
T  40160824 ttttaaaggtgaataagtggggtgtccggggttcaaaccccagccccggcata 40160772  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 32660914 - 32660858
Alignment:
Q  264 aaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 320  Q
    ||||||||| ||||||||||||| | ||  ||||| |||||||||||| ||||||||    
T  32660914 aaggtgaaaaagtggggtgtccggggtttgaaccccagcccctgcatatataatgca 32660858  T

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