View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_high_16 (Length: 340)
Name: NF17959_high_16
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 28923779 - 28923457
Alignment:
| Q |
1 |
gtggtccgttctttaacttgtatgggggtctatgatttcttgagttattttggcgtgtcttcaaaagttcatgatcgttttagtgattttctattatgaa |
100 |
Q |
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| T |
28923779 |
gtggtccgttctttaacttgtatgggggtctatgatttcttgagttattttggcgtgttttcaaaagttcatgatcgttttagtgattttctattatgaa |
28923680 |
T |
|
| Q |
101 |
ttttgggttggtttcaaatatccacagaaatgctagtgaagaattttccattgagtataccaaacgatcctttgttgtacattgaccttatatgctgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28923679 |
ttttgggttggtttcaaatatccacagaaatgctagtgaagaattttccattgagtataccaaacgatcctttgttgtacattgaccttatatgctgttt |
28923580 |
T |
|
| Q |
201 |
tctgatgctgtataactttattgaatatttgctttgagtcagcatcatgatgacaaccggtggttgtattgagcgtatcatttcgctctttctgttttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28923579 |
tctgatgctgtataactttattgaatatttgctttgagtcagcatcatgatgacaaccggtggttgtattgagcgtatcatttcgctctttctgttttat |
28923480 |
T |
|
| Q |
301 |
caatcaatgtaattgacctatct |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
28923479 |
caatcaatgtaattgacctatct |
28923457 |
T |
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