View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_high_18 (Length: 335)
Name: NF17959_high_18
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 1352736 - 1353059
Alignment:
| Q |
1 |
acaaccatttttaagggagaataagtgccattcttttggttgttccaaatgtaagtatcttccatggtataattgaaattggcgaggatgtgatttatgt |
100 |
Q |
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| T |
1352736 |
acaaccatttttaagggagaataagtgccattcttttggttgttccaaatgtaagtatcttccacggtataattgaaattggcgtggatgtgatttatgt |
1352835 |
T |
|
| Q |
101 |
ggtcagaggtcgtctgagatgactgggtatagagaatatgcgtgtgaggatcattagccgagagaacatatttaaccgtaagctgaatgtcatgaatatc |
200 |
Q |
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| T |
1352836 |
ggtcagaggtcgtatgagatgactgggtatagagaatatgcgtgtgaggatcattagccgagagaacatatttaaccgtaagctgaatgtcatgaatatc |
1352935 |
T |
|
| Q |
201 |
tatataagggacaagagacccaagaattccaagagttgtccattgactaaaccagaaggatgaagacccagactcagcacgccagacatatcatgcttta |
300 |
Q |
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| T |
1352936 |
tatataaggaacaagagacccaagaattccaagagttgtccattgactaaaccaaaaggatgaagacccagactcagcacgccagacatatcatgcttta |
1353035 |
T |
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| Q |
301 |
agaacatttttagctttgatgatg |
324 |
Q |
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| T |
1353036 |
agaacatttttagctttgatgatg |
1353059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 25122002 - 25122262
Alignment:
| Q |
17 |
gagaataagtgccattcttttggttgttccaaatgtaagtatcttccatggtataattgaaattggcgaggatgtgatttatgtggtcagaggtcgtctg |
116 |
Q |
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| T |
25122002 |
gagaataagtgccattcttttggttgttccaaatgtaagcatcttccatagtatcattgaaattagtgtggatgtgatttatgtggttagaggttgtcta |
25122101 |
T |
|
| Q |
117 |
agatgactggg--------tatagagaatatgcgtgtgaggatcattagccgagagaacatatttaaccgtaagctgaatgtcatgaatatctata--ta |
206 |
Q |
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| T |
25122102 |
agatagctgggcctgggtatatagagaatacgcgtgtgaggatcattagtcgatagaacatctttgaccgtaagct-aatgtcatgaatatctatatata |
25122200 |
T |
|
| Q |
207 |
agggacaagagacccaagaattccaagagttgtccattgactaaaccagaaggatgaagacc |
268 |
Q |
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| T |
25122201 |
agggacaagggacccaagaatgccaagagtcgtccattggctaaaccagaaggatgaagacc |
25122262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 9535869 - 9535735
Alignment:
| Q |
88 |
atgtgatttatgtggtcagaggtcgtctgagatgactgggtatagagaatatgcgtgtgaggatcattagccgagagaacatatttaaccgtaagctgaa |
187 |
Q |
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||||| |||||||| | |||||||| |||||| | |||||||||||||| || || |||||||| || |||||||||| |||||| || ||||| | |
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| T |
9535869 |
atgtgttttatgtgattagaggtcgcatgagataggttggtatagagaatatttgtctgcggatcatttgcagagagaacatctttaacagtgagctgca |
9535770 |
T |
|
| Q |
188 |
tgtcatgaatatctatataagggacaagagaccca |
222 |
Q |
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| T |
9535769 |
agtcatggatatcaatataagggacaagagaccca |
9535735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 21376776 - 21376683
Alignment:
| Q |
133 |
agaatatgcgtgtgaggatcattagccgagagaacatatttaaccgtaagctgaatgtcatgaatatctatataagggacaagagacccaagaa |
226 |
Q |
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||||||| |||||| |||||||||| | ||| |||| ||| || || || || | |||||| || || ||||||||||||||||||||||||| |
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| T |
21376776 |
agaatattcgtgtggggatcattagaagtgagcacatcttttacggttagatgcaagtcatgtatgtcaatataagggacaagagacccaagaa |
21376683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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