View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_high_20 (Length: 315)
Name: NF17959_high_20
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 54012901 - 54013191
Alignment:
| Q |
18 |
aacttatcatatt-gatcaaattttaaagctaatcgatgtaacctatcatatttgatcaaattataaaacttatcgttctaacgatgaaaataaacttgt |
116 |
Q |
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| T |
54012901 |
aacttatcatatttgatcaaattttaaagctaatcaatgtaacttatcatatttgatcaaattataaaacttatcgttctaacgatgaaaacaaatttgt |
54013000 |
T |
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| Q |
117 |
gtataatgtaagatttgtcttacttatacaccgtagaattggttataaaaatagtatttatctttttgcaacgttatgtcgaaagnnnnnnnnnnnntcg |
216 |
Q |
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| T |
54013001 |
gtataatgtaagatttgtcttacttatacactgtagaattggttataaaaatagcatttatctttttgcaacgttatgtcgaaagaaaaaataaaaatcg |
54013100 |
T |
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| Q |
217 |
taatgctattttttcctttgaattgcaaatgtttgtaggctagtagttgttatgttaatcgttgttttcttgcatttagttatttcttctc |
307 |
Q |
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| T |
54013101 |
taatgctattttttcctttgaattgcaaatgtttgtaggctagtagttgttatgttaatcgttgttttcttgcatttagttatttcttctc |
54013191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 54012892 - 54012928
Alignment:
| Q |
48 |
aatcgatgtaacctatcatatttgatcaaattataaa |
84 |
Q |
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| T |
54012892 |
aatcgatgtaacttatcatatttgatcaaattttaaa |
54012928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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