View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_high_23 (Length: 293)
Name: NF17959_high_23
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 9629402 - 9629654
Alignment:
| Q |
17 |
ctgtgagacataaaaagaaaagagatattcactgattcttgatcttgtctctagatggtaataacctatcttaataaaatgtttgctggatttgttgagc |
116 |
Q |
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| T |
9629402 |
ctgtgagacataaaaagaaaagagatattcattgattcttgatcttgtctctagatggtaataacctttcttaataaaatgtttgctggatttgttgagc |
9629501 |
T |
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| Q |
117 |
aagttcttcagcactgagttggcattcaattccaatctacataagagaaattttaagaaaatataattaattattaatggaccgaaattgaaaacataaa |
216 |
Q |
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| T |
9629502 |
aagttcttcagcactgagttggcattcaattccaatctacataagagaaattttaagaaaatataattaattattaatggaccaaaattgaaaacataaa |
9629601 |
T |
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| Q |
217 |
taacattaacacacatgatacatgcatactcaatcattagctgctatgaatta |
269 |
Q |
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| T |
9629602 |
taacattaacacacatgatacatgcatactcaatcattagctgctatgaatta |
9629654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 41258637 - 41258571
Alignment:
| Q |
94 |
aatgtttgctggatttgttgagcaagttcttcagcactgagttggcattcaattccaatctacataa |
160 |
Q |
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| T |
41258637 |
aatgtttgctggatttgttgagcaagttcttcagcactcagttggcattcaattccaatctatataa |
41258571 |
T |
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