View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_high_28 (Length: 279)
Name: NF17959_high_28
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 1352759 - 1352509
Alignment:
| Q |
11 |
ttattctcccttaaaaatggttgtataggtctataaaaaatgcaataaaattacaacttcattcttttcctttannnnnnnnnnccaaagttatgaaagg |
110 |
Q |
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| T |
1352759 |
ttattctcccttaaaaatggttgtataggtccataaaaaatgcaataaaattacaacttcattcttttcctttattttttttt-ccaaagttatgaaagg |
1352661 |
T |
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| Q |
111 |
tggactatgaaaagtaagaagaacttaatagtggaagtagggttgtccttgagattttggatgctctatatgatccgagaaaattttttcttcggaatca |
210 |
Q |
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| T |
1352660 |
tggactatgataagtaagaagaacttaatagtggaagtagggttgtccttgagattttggatgctctatatgatccgagaaatttttttcttcgaaatca |
1352561 |
T |
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| Q |
211 |
tttaaatttataatctttgcatttatatctgcaaatttattgatcatccatc |
262 |
Q |
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| T |
1352560 |
tttaaatttatcatctttgcatttatatctgcaaaattattgatcatccatc |
1352509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 28 - 262
Target Start/End: Complemental strand, 1357028 - 1356790
Alignment:
| Q |
28 |
tggttgtataggtctataaaaaatgcaataaaattacaacttcattcttttcctttannnnnnnnnnccaaagttatgaaaggtggactatgaaaagtaa |
127 |
Q |
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| T |
1357028 |
tggttgtataggtccagaaaaaatgcaataaaattacaacttcattcttttcctttattttattt--cctaggttatcaaaggtggaatatgaaaagtaa |
1356931 |
T |
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| Q |
128 |
gaagaacttaatagtggaagtagggttgtccttgagattttggatgctctatatgatccgagaaaatt------ttttcttcggaatcatttaaatttat |
221 |
Q |
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| T |
1356930 |
gaagaacttaatagtggaggtagggtttcccttgagattttggatgctctatatgatctgagattttttttttcttttcttcgtaatcatttaaatttat |
1356831 |
T |
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| Q |
222 |
aatctttgcatttatatctgcaaatttattgatcatccatc |
262 |
Q |
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| T |
1356830 |
catctttgcatttatatctgcaaaattattgatcatccatc |
1356790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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