View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17959_high_4 (Length: 612)
Name: NF17959_high_4
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 336 - 596
Target Start/End: Original strand, 36266386 - 36266646
Alignment:
| Q |
336 |
tcacctgtgctcgaacagataacgtaaaaattgagttttttctatacgtaatgacttgagttggaggaatagtggttctggggtttgaagagaatgaagg |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36266386 |
tcacctgtgctcgaacagataacgtaaaaattgagttttttctatacgtaatgacttgagttggaggaatagtggttctggggtttgaagagaatgaagg |
36266485 |
T |
|
| Q |
436 |
gaagacatgaaagtgacccttgagagaaatcaacggttccattgaaaagggtaatggaaaatttgaagcaagaac-nnnnnnnncacaaagatgaaattt |
534 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36266486 |
gaagacatgaaagtgacccttgagagaaatcaacggttccattgaaaagggtaatggaaaatttgaagcaagaacaaaaaaaaacacaaagatgaaattt |
36266585 |
T |
|
| Q |
535 |
ttgtaactgaagagattgtgttgtgttacatttacaaagaaacaagaagtgtggttgaaagg |
596 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
36266586 |
ttgt-actgaagagattgtgttgtgttacatttacaaaggaacaagaagtgttgttaaaagg |
36266646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 36266061 - 36266167
Alignment:
| Q |
10 |
caacacagactacaaatgaacacatgtatcagttaaaaatcaactaaattcacaagatggggtcattttagcagaaccttcattgtgctccagcataatc |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36266061 |
caacacaaactacaaatgaacacatgtatcagttaaaaatcaactaaattcacaagatggggtcattttagcagaaccttcattgtgctccagcataatc |
36266160 |
T |
|
| Q |
110 |
ataacag |
116 |
Q |
| |
|
||||||| |
|
|
| T |
36266161 |
ataacag |
36266167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 36266237 - 36266289
Alignment:
| Q |
187 |
tcatcaacacaaactccaattgaacacatatatcattcaaaattcaactaaac |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36266237 |
tcatcaacacaaactccaattgaacacatatatcattcaaaattcaactaaac |
36266289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University