View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17959_high_40 (Length: 237)
Name: NF17959_high_40
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_high_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 16576264 - 16576459
Alignment:
| Q |
1 |
tttacaagacttttactttttccatcgtatatgtttctctatcgtaaagcttaaaaaagtactatcaataaaagtctgattctaattcgccggttgttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
16576264 |
tttacaagacttttactttttccatcctatatgtttctctatcgtaaaacttaaaaaagtactatcaatcaaagtctgattctaattcgc-ggttgttct |
16576362 |
T |
|
| Q |
101 |
tcgagaaggtccctaaccaagaagatattggtttcaccaatatcttggataagaattttaaagccattcttgaatgggaactagttatcttcccaca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16576363 |
tcgagaaggtccctaaccaagaagatattgatttcaccaatatcttggataagaattttaaagccattcttgaatgggaactagttatcttcccaca |
16576459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University