View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17959_high_44 (Length: 234)

Name: NF17959_high_44
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17959_high_44
NF17959_high_44
[»] chr8 (2 HSPs)
chr8 (30-230)||(16908770-16908970)
chr8 (1-33)||(16908733-16908765)
[»] chr1 (1 HSPs)
chr1 (38-230)||(14869695-14869887)
[»] chr7 (5 HSPs)
chr7 (68-207)||(14710257-14710396)
chr7 (61-123)||(26260388-26260450)
chr7 (65-119)||(26204405-26204459)
chr7 (65-119)||(26224043-26224097)
chr7 (61-123)||(26227488-26227550)
[»] chr5 (3 HSPs)
chr5 (68-187)||(17572660-17572779)
chr5 (68-187)||(17619933-17620052)
chr5 (61-182)||(5995045-5995166)
[»] chr6 (1 HSPs)
chr6 (97-204)||(12613434-12613541)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 16908770 - 16908970
Alignment:
Q  30 aaaccatcatcaccgtcttcggcatcttcgatttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgag 129  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16908770 aaaccatcatcaccgtcttcggcatcttcgattttcctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgag 16908869  T
Q  130 gagtagggaacttgttcatgctcccaaaactaacatagagaacagaatcatctttctttgaatcaagccacttaagcaccccttcttcttcatcttcttc 229  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16908870 gagtagggaacttgttcatgctcccaaaactaacataaagaacagaatcatatttctttgaatcaagccacttaagcaccccttcttcttcatcttcttc 16908969  T
Q  230 t 230  Q
    |    
T  16908970 t 16908970  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16908765 - 16908733
Alignment:
Q  1 agtgagtttgagaagagaatgaaggaaagaaac 33  Q
    ||||||||||||||||||||||| |||||||||    
T  16908765 agtgagtttgagaagagaatgaaagaaagaaac 16908733  T

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Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 14869887 - 14869695
Alignment:
Q  38 atcaccgtcttcggcatcttcgatttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtaggg 137  Q
    |||||| |||||  ||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  14869887 atcaccatcttcaacatcttcaattttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtaggg 14869788  T
Q  138 aacttgttcatgctcccaaaactaacatagagaacagaatcatctttctttgaatcaagccacttaagcaccccttcttcttcatcttcttct 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  14869787 aacttgttcatgctcccaaaactaacatagagaacagaatcatctttcttagaatcaagccacttaagcactccttcatcttcatcttcttct 14869695  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 207
Target Start/End: Original strand, 14710257 - 14710396
Alignment:
Q  68 aacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatag 167  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||||||||  |||||||  || ||||||||||| | ||| |||||||| | ||||    
T  14710257 aacaacccaaatgaaatcatggcttgaagcttcaagtgcatgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttagatag 14710356  T
Q  168 agaacagaatcatctttctttgaatcaagccacttaagca 207  Q
    ||||||||||  |||||||| || | |||||| |||||||    
T  14710357 agaacagaattctctttcttagagttaagccatttaagca 14710396  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 26260450 - 26260388
Alignment:
Q  61 tttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaa 123  Q
    |||| ||||||||||||||||||| ||| || |||| ||||||| ||||||||||||||||||    
T  26260450 ttttcctaacaacccaaatgaaattatgacctgaattttcaagtccatgagctatttcaacaa 26260388  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 26204459 - 26204405
Alignment:
Q  65 tctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttca 119  Q
    |||||||||||||||||||| ||| ||||||| ||||||  ||||||||||||||    
T  26204459 tctaacaacccaaatgaaattatgaccagaattttcaagaccatgagctatttca 26204405  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 26224097 - 26224043
Alignment:
Q  65 tctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttca 119  Q
    |||||||||||||||||||| ||| ||||||| ||||||  ||||||||||||||    
T  26224097 tctaacaacccaaatgaaattatgaccagaattttcaagaccatgagctatttca 26224043  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 26227550 - 26227488
Alignment:
Q  61 tttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaa 123  Q
    |||| ||||||||||||||||||| ||| || |||| ||||||  ||||||||||||| ||||    
T  26227550 ttttcctaacaacccaaatgaaattatgacctgaattttcaagaccatgagctatttctacaa 26227488  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 17572660 - 17572779
Alignment:
Q  68 aacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatag 167  Q
    |||||||||||||||||||||||  |||  |||||||||||||||||||||||  |||||||  || ||||||||||| | ||| |||||||| ||||||    
T  17572660 aacaacccaaatgaaatcatggcttgaagtttcaagtgcatgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttacatag 17572759  T
Q  168 agaacagaatcatctttctt 187  Q
    ||||||||||  ||||||||    
T  17572760 agaacagaattctctttctt 17572779  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 17620052 - 17619933
Alignment:
Q  68 aacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatag 167  Q
    ||||||||||||||||| |||||  ||| ||||||||||||||||||||||||  |||||||  |  ||||||||||| | ||| |||||||| ||||||    
T  17620052 aacaacccaaatgaaattatggcttgaagcttcaagtgcatgagctatttcaatgagttgagatggtgggaacttgtttaagctgccaaaacttacatag 17619953  T
Q  168 agaacagaatcatctttctt 187  Q
    | ||||||||  ||||||||    
T  17619952 ataacagaattctctttctt 17619933  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 5995045 - 5995166
Alignment:
Q  61 tttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaact 160  Q
    |||||||||||||||||||||||| ||| || |||| |||||||||||| || |||||||| |  |||| |  ||| || || ||||| || ||||||||    
T  5995045 tttttctaacaacccaaatgaaattatgacctgaattttcaagtgcatgtgcaatttcaactaactgagaataaggaaatttattcatactgccaaaact 5995144  T
Q  161 aacatagagaacagaatcatct 182  Q
     ||||| | ||||||| |||||    
T  5995145 tacatataaaacagaaccatct 5995166  T

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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 12613541 - 12613434
Alignment:
Q  97 cttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatagagaacagaatcatctttctttgaatcaag 196  Q
    ||||||||||||||||||||||||  |||||||  |  ||||||||||||||||| |||||||| ||||||||||||||||  |||||||| |||| |||    
T  12613541 cttcaagtgcatgagctatttcaatgagttgagatgatgggaacttgttcatgctaccaaaacttacatagagaacagaattctctttcttggaattaag 12613442  T
Q  197 ccacttaa 204  Q
    ||| ||||    
T  12613441 ccatttaa 12613434  T

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