View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_high_48 (Length: 219)
Name: NF17959_high_48
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 21390012 - 21390217
Alignment:
| Q |
2 |
agatggacatcatcatcatcttcataagcatccttcaacgtaacaatattaggatatttaggtaaatgcctcataatttcaacctctcttctaacatctt |
101 |
Q |
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||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21390012 |
agatgaacattatcatcatcttcataagtatccttcaacgtaacaatattaggatgtttaggtaaatgcctcataatttcaacctctcttctaacatctt |
21390111 |
T |
|
| Q |
102 |
caatatcaatcgctgttcttagcttatcctttgaaatcgatttacaagctaattcctctcccgtttctctatctttacataaatacgttattccaaattc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21390112 |
caatatcaatcgctgttcttagcttatcctttgaaatcgatttacaagctaattcctctcccgtttctctatctttacataaatacgttattccaaattc |
21390211 |
T |
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| Q |
202 |
tcctct |
207 |
Q |
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|||||| |
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| T |
21390212 |
tcctct |
21390217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 36384317 - 36384462
Alignment:
| Q |
2 |
agatggacatcatcatcatcttcataagcatccttcaacgtaacaatattaggatatttaggtaaatgcctcataatttcaacctctcttctaacatctt |
101 |
Q |
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||||| ||| ||| |||||||||||||| ||| |||||||||||||||||| || || || | || ||||| |||||||| |||||||||||||||| |
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| T |
36384317 |
agatgaacagcattatcatcttcataagtatctttcaacgtaacaatattattatgctttggcatgtgtctcattatttcaacttctcttctaacatctt |
36384416 |
T |
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| Q |
102 |
caatatcaatcgctgttcttagcttatcctttgaaatcgatttaca |
147 |
Q |
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| T |
36384417 |
caatatcaatcgctgttctaagcttcttcttcgatatcgacttaca |
36384462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 25214555 - 25214487
Alignment:
| Q |
44 |
acaatattaggatatttaggtaaatgcctcataatttcaacctctcttctaacatcttcaatatcaatc |
112 |
Q |
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||||||||||||| || ||| |||||||||||||| | ||||||||| || ||||||| |||||||||| |
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| T |
25214555 |
acaatattaggatgttcaggcaaatgcctcataatctgaacctctctcctcacatcttgaatatcaatc |
25214487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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