View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17959_high_8 (Length: 512)
Name: NF17959_high_8
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 34136572 - 34137065
Alignment:
| Q |
1 |
aggagcacgattataatttaatttagaaaccannnnnnncaacctaannnnnnnctaatttagtactccgtttcgactcttttgataataatccatgtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
34136572 |
aggagcacgattataatttaatttagaaaccatttttttcaacctaatttttttctaatttagtactcagttttgattcttttgataataatccatgtat |
34136671 |
T |
|
| Q |
101 |
gcatgcgtctttaaactacatttggcacatggaatatttcctagctttactattgtgcacaatgagattttactcacttgaatttgtcatttatttcagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34136672 |
gcatgcgtctttaaactacatttggcacacggaatatttcctagctttactattgtgcacaatgagattttactcacttgaatttgtcatttatttcagg |
34136771 |
T |
|
| Q |
201 |
tctgggatcttggcggacaagaaagacttcggacatcatgggcaacatattaccgaggaactcatgctgtaattgcagtgattgacagcagtgatagagc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34136772 |
tctgggatcttggcggacaagaaagacttcggacatcatgggcaacatattaccgaggaactcatgctgtaattgcagtgattgacagcagtgatagagc |
34136871 |
T |
|
| Q |
301 |
taggatctctttaatgaaggatgaacttttcaggttgctgggtcatgaagatttacaacattcagtcatccttgtctttgctaataaacaagatatcaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34136872 |
taggatctctttaatgaaggatgaacttttcaggttgctgggtcatgaagatttacaacattcagtcatccttgtctttgctaataaacaagatatcaag |
34136971 |
T |
|
| Q |
401 |
gatgctatgactcctgctgaaatcactgatgctctgtcacttcacagcatcaaggatcatgattggcatatacaagcttgcagtgccatctcag |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34136972 |
gatgctatgactcctgctgaaatcactgatgctctgtcacttcacagcatcaaggatcatgattggcatatacaagcttgcagtgccatctcag |
34137065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 477
Target Start/End: Complemental strand, 34150785 - 34150709
Alignment:
| Q |
401 |
gatgctatgactcctgctgaaatcactgatgctctgtcacttcacagcatcaaggatcatgattggcatatacaagc |
477 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| |||| ||| |||||||||| |||||||| |||||| ||||||| |
|
|
| T |
34150785 |
gatgctattactcctgctgagattactgatgcagtgtctctttacagcatcaatgatcatgaatggcatttacaagc |
34150709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University