View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_1 (Length: 670)
Name: NF17959_low_1
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 9 - 545
Target Start/End: Original strand, 40649524 - 40650058
Alignment:
| Q |
9 |
ggtagataattctatgaatttaaattcttttcagttgaagacactggaagcactagcgtagtggtatcatggagtcttaaattaagctttctcaaattat |
108 |
Q |
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| T |
40649524 |
ggtaaataattctatgaatttaaattcttttcagttgaagacattggaagcactagtgtagtggtatcatggagtcttaaattaagctttctcaaattat |
40649623 |
T |
|
| Q |
109 |
ttgtttggtctttgaattttaaaccaaatgattataagtaaacaaagatccaatgttggggctcatttgcttggtcttttttaaaattgaactctttggg |
208 |
Q |
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| T |
40649624 |
ttgtttggtctttgaattttaaaccaaatgattataagtaaacaaagatccaatgttggggctcatttgcttggtcttttttaaaattgaactctttggg |
40649723 |
T |
|
| Q |
209 |
ctagaaagtttaatttaacatgcactatttttgctcaaatgtattttattgttaacgttaattgttaatgcttatgtgttgcaggttaagaaattccatg |
308 |
Q |
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| T |
40649724 |
ctagaaagtttaatttaacatgcactatttttgctcaaatgtattttattgttaacgttaattgttaatgcttatgtgttgcaggttaagaaattccatg |
40649823 |
T |
|
| Q |
309 |
gatgaaaagctttacaagtgacctaagattttgtgttggtttatgtataatctttatgatcatacaatatatgagatttggtgtatatttacgtgtaaaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40649824 |
gatgaaaagctttacaagtgacctaagattttgtgttggtttatgtataatctttatgatcatacaatatatgagatttggtgtatatttacgtgtaaaa |
40649923 |
T |
|
| Q |
409 |
cnnnnnnnnnnctttctctctatatagcttaatggagtgattgtaaccttttatcatgatcccnnnnnnnnnnnnnnnnnnnnnnnnatcatgatcttct |
508 |
Q |
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| T |
40649924 |
ctattttttt--tttctctcgatatagcttaatggagtgattgtaaccttttatcatgatccctttttctttttgtggcaattttttatcatgatcttct |
40650021 |
T |
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| Q |
509 |
ctcgtagctaggttcaatttttattctataatattcc |
545 |
Q |
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| T |
40650022 |
ctcgtagctaggttcaatttttattctataatattcc |
40650058 |
T |
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