View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_11 (Length: 417)
Name: NF17959_low_11
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 158 - 286
Target Start/End: Complemental strand, 15322767 - 15322637
Alignment:
| Q |
158 |
taaaacttgatatctaccctcaacataatattaacaatacttacactttttgtaaaataataggg--acactactctcatcaaatccatttgatcacatt |
255 |
Q |
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| T |
15322767 |
taaaacttaatatctaccctcaacataatattaacaatacttacacttgttgtaaaataatagggttacactactctcatcaaatccatttgatcacatt |
15322668 |
T |
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| Q |
256 |
acacaatacttgaatttaattggacgtgtaa |
286 |
Q |
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| T |
15322667 |
acacaatacttgaatttaattggacgtgtaa |
15322637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 286 - 388
Target Start/End: Complemental strand, 15322614 - 15322512
Alignment:
| Q |
286 |
aacaaaaaattattcattcatgataaaagacgggtttggatcctcttctaccatttttgtcatgttgttggtgctgcattaatcacaaccattcatctat |
385 |
Q |
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| T |
15322614 |
aacaaaaaattattcattcatgataaaagacgggtttagatcctcttctaccatttttgttatgttgttggtgctgcattaatcacaaccattcatccat |
15322515 |
T |
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| Q |
386 |
ctc |
388 |
Q |
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| T |
15322514 |
ctc |
15322512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 15322889 - 15322761
Alignment:
| Q |
1 |
accttaaactctagaaagaatataatcacaaaaataggaaggnnnnnnnn-ctgatcatataattaggataatgaaaatatcaattaactaaaaagaaaa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15322889 |
accttaaactctagaaagaatataatcacaaaaataggaaggaaaaaaaaactgatcatataattaggataatgaaaatatcaattaactaagaagaaaa |
15322790 |
T |
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| Q |
100 |
tagatcttattactaagagatttaaaact |
128 |
Q |
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| T |
15322789 |
tagatctcattactgagagatttaaaact |
15322761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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