View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17959_low_16 (Length: 345)

Name: NF17959_low_16
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17959_low_16
NF17959_low_16
[»] chr3 (23 HSPs)
chr3 (13-327)||(22437377-22437691)
chr3 (80-324)||(22443485-22443729)
chr3 (80-324)||(22368655-22368887)
chr3 (13-100)||(22358987-22359074)
chr3 (18-100)||(22636488-22636570)
chr3 (80-329)||(22631210-22631447)
chr3 (18-165)||(22638031-22638184)
chr3 (80-329)||(22636247-22636484)
chr3 (16-100)||(22368891-22368975)
chr3 (80-327)||(22632608-22632843)
chr3 (80-329)||(22358746-22358983)
chr3 (119-309)||(22459220-22459407)
chr3 (119-309)||(22482201-22482388)
chr3 (80-188)||(22468818-22468926)
chr3 (82-185)||(22354247-22354350)
chr3 (241-327)||(22431891-22431977)
chr3 (13-71)||(22445499-22445557)
chr3 (77-202)||(22207487-22207612)
chr3 (18-100)||(22632847-22632935)
chr3 (274-319)||(22370901-22370946)
chr3 (266-327)||(22468691-22468752)
chr3 (16-96)||(22354360-22354434)
chr3 (13-55)||(22371143-22371185)
[»] chr4 (1 HSPs)
chr4 (89-146)||(29611145-29611202)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 22437691 - 22437377
Alignment:
Q  13 aatattagcaaattaaaatcaaatatacaacaaaatgtgtgactgtaacgctgcacttgcctgcgctcgtgatcatttgcttccactattaaaggtagca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22437691 aatattagcaaattaaaatcaaatatacaacaaaatgtgtgactgtaacgctgcacttgcctgcgctcgtgatcatttgcttccactattaaaggtagca 22437592  T
Q  113 ttcagcatgattaggggtgtcccaaaagaaattgcatatttgaaagatgaactagagagcatggaagacttcatcagcaatgaagatagattcgctgatg 212  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22437591 ttcaacatgattaggggtgtcccaaaagaaattgcagatttgaaagatgaactagagagcatggaagacttcatcagcaatgaagatagattcgctgatg 22437492  T
Q  213 aagaagaagacnnnnnnngaagtgatgcaatcaaagcaaggatgaagaagttaatagaagcatcttttgacatagaagatgtcattgatgattatatctt 312  Q
    |||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22437491 aagaagaagacaaaaaaagaagtgatgcaatcaaagcaaggatgaagaagctaatagaagcatcttttgacatagaagatgtcattgatgattatatctt 22437392  T
Q  313 ccatgaggaacaaca 327  Q
    |||||||||||||||    
T  22437391 ccatgaggaacaaca 22437377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 80 - 324
Target Start/End: Complemental strand, 22443729 - 22443485
Alignment:
Q  80 cgtgatcatttgcttccactattaaaggtagcattcagcatgattaggggtgtcccaaaagaaattgcatatttgaaagatgaactagagagcatggaag 179  Q
    |||||||||||||||||| | || |||| |||||||| |||||||| |||||||||||||||||||||| | ||||||||||||||||| || || |||     
T  22443729 cgtgatcatttgcttccaatcttgaaggaagcattcaacatgattaagggtgtcccaaaagaaattgcagaattgaaagatgaactagaaagaattgaaa 22443630  T
Q  180 acttcatcagcaatgaagatagattcgctgatgaagaagaagacnnnnnnngaagtgatgcaatcaaagcaaggatgaagaagttaatagaagcatcttt 279  Q
    | ||||||| ||||| ||||||| | |||||||  |||||||||        |||| |   ||||||||||| ||| ||  |||| ||||||||||||||    
T  22443629 aattcatcaacaatgcagatagaatggctgatgctgaagaagacgtggaaacaagtcagaaaatcaaagcaatgatcaaacagttgatagaagcatcttt 22443530  T
Q  280 tgacatagaagatgtcattgatgattatatcttccatgaggaaca 324  Q
    | | ||||||||||||||||||||||||||||||| ||| |||||    
T  22443529 tcatatagaagatgtcattgatgattatatcttccttgaagaaca 22443485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 80 - 324
Target Start/End: Complemental strand, 22368887 - 22368655
Alignment:
Q  80 cgtgatcatttgcttccactattaaaggtagcattcagcatgattaggggtgtcccaaaagaaattgcatatttgaaagatgaactagagagcatggaag 179  Q
    |||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||||||| || ||||| ||||    
T  22368887 cgtgatcatttgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaacttgaaagcattgaag 22368788  T
Q  180 acttcatcagcaatgaagatagattcgctgatgaagaagaagacnnnnnnngaagtgatgcaatcaaagcaaggatgaagaagttaatagaagcatcttt 279  Q
    ||||||||| | |||  ||||||    ||||||| | |||||||       |||       ||||||||  | || |||| || | |||||| |||||||    
T  22368787 acttcatcaacgatgcggatagaagatctgatgatgtagaagac-----aagaa-------aatcaaagacatgacgaagcagctgatagaaacatcttt 22368700  T
Q  280 tgacatagaagatgtcattgatgattatatcttccatgaggaaca 324  Q
    | ||||||||||||||||||||||||||||||||| |||||||||    
T  22368699 tcacatagaagatgtcattgatgattatatcttccttgaggaaca 22368655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 22359074 - 22358987
Alignment:
Q  13 aatattagcaaattaaaatcaaatatacaacaaaatgtgtgactgtaacgctgcacttgcctgcgctcgtgatcatttgcttccacta 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  22359074 aatattagcaaattgaaatcaaatatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccacta 22358987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 22636570 - 22636488
Alignment:
Q  18 tagcaaattaaaatcaaatatacaacaaaatgtgtgactgtaacgctgcacttgcctgcgctcgtgatcatttgcttccacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  22636570 tagcaaattaaaatcaaatatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccacta 22636488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 80 - 329
Target Start/End: Complemental strand, 22631447 - 22631210
Alignment:
Q  80 cgtgatcatttgcttccactattaaaggtagcattcagcatgattaggggtgtcccaaaagaaattgcatatttgaaagatgaactagagagcatggaag 179  Q
    |||||||| ||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||||||| || || || ||||    
T  22631447 cgtgatcacttgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaag 22631348  T
Q  180 acttcatcagcaatgaagatagattcgctgatgaagaagaagacnnnnnnngaagtgatgcaatcaaagcaaggatgaagaagttaatagaagcatcttt 279  Q
     |||||||| | |||  ||||||   |||||||| | |||||||       |||       ||||||||  | ||| ||| || | ||||||||||||||    
T  22631347 tcttcatcaacgatgcggatagaagggctgatgatgtagaagac-----aagaa-------aatcaaagacatgatcaagcagctgatagaagcatcttt 22631260  T
Q  280 tgacatagaagatgtcattgatgattatatcttccatgaggaacaacatg 329  Q
      |||| |||||||||||||||||||||||||||||||||||||||||||    
T  22631259 ccacatggaagatgtcattgatgattatatcttccatgaggaacaacatg 22631210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 22638184 - 22638031
Alignment:
Q  18 tagcaaattaaaatcaaatatacaacaaaatgtgtgac------tgtaacgctgcacttgcctgcgctcgtgatcatttgcttccactattaaaggtagc 111  Q
    |||||||||||||||||| ||||||||||||||||||       ||| |||||||| || |||  ||||||||| | ||||||||||| || |||| |||    
T  22638184 tagcaaattaaaatcaaagatacaacaaaatgtgtgataaaatgtgtgacgctgcattttccttagctcgtgataaattgcttccactcttgaaggaagc 22638085  T
Q  112 attcagcatgattaggggtgtcccaaaagaaattgcatatttgaaagatgaact 165  Q
    ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  22638084 attcaacatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaact 22638031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 80 - 329
Target Start/End: Complemental strand, 22636484 - 22636247
Alignment:
Q  80 cgtgatcatttgcttccactattaaaggtagcattcagcatgattaggggtgtcccaaaagaaattgcatatttgaaagatgaactagagagcatggaag 179  Q
    |||||||||||||||||| | || |||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||||||| || || || ||||    
T  22636484 cgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaag 22636385  T
Q  180 acttcatcagcaatgaagatagattcgctgatgaagaagaagacnnnnnnngaagtgatgcaatcaaagcaaggatgaagaagttaatagaagcatcttt 279  Q
     |||||||| | |||  ||||||   |||||||| | |||||||       |||       ||||||||  | ||| ||| || | ||||||||||||||    
T  22636384 tcttcatcaacgatgcggatagaagggctgatgatgtagaagac-----aagaa-------aatcaaagacatgatcaagcagctgatagaagcatcttt 22636297  T
Q  280 tgacatagaagatgtcattgatgattatatcttccatgaggaacaacatg 329  Q
    | |||| |||||||||||||||||||||||||| | ||||||||||||||    
T  22636296 tcacattgaagatgtcattgatgattatatctttcttgaggaacaacatg 22636247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 22368975 - 22368891
Alignment:
Q  16 attagcaaattaaaatcaaatatacaacaaaatgtgtgactgtaacgctgcacttgcctgcgctcgtgatcatttgcttccacta 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  22368975 attagcaaattgaaatcaaatatacaacaaaatgtgtgactgtaaagctgcacttgcctgcgctcgtgataacttgcttccacta 22368891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 327
Target Start/End: Complemental strand, 22632843 - 22632608
Alignment:
Q  80 cgtgatcatttgcttccactattaaaggtagcattcagcatgattaggggtgtcccaaaagaaattgcatatttgaaagatgaactagagagcatggaag 179  Q
    |||||||| ||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||| | | |||||||||||||| || || || ||||    
T  22632843 cgtgatcacttgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgaaagatgaacttgaaagaattgaag 22632744  T
Q  180 acttcatcagcaatgaagatagattcgctgatgaagaagaagacnnnnnnngaagtgatgcaatcaaagcaaggatgaagaagttaatagaagcatcttt 279  Q
     |||||||| | |||  ||||||   |||||||| | |||||||       |||       ||||||||  | ||| ||| || | ||||||||||||||    
T  22632743 tcttcatcaacgatgtggatagaacagctgatgatgtagaagac-----aagaa-------aatcaaagacatgatcaagcagctgatagaagcatcttt 22632656  T
Q  280 tgacatagaagatgtcattgatgattatatcttccatgaggaacaaca 327  Q
    | |||| |||||||||||||||||||||||||| | ||||||||||||    
T  22632655 tcacattgaagatgtcattgatgattatatctttcttgaggaacaaca 22632608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 329
Target Start/End: Complemental strand, 22358983 - 22358746
Alignment:
Q  80 cgtgatcatttgcttccactattaaaggtagcattcagcatgattaggggtgtcccaaaagaaattgcatatttgaaagatgaactagagagcatggaag 179  Q
    |||||||||||||||||| | || |||| |||||||| ||||||||||||||||||||||||||||| | | ||| |||| |||||||| || || ||||    
T  22358983 cgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaagaatagaag 22358884  T
Q  180 acttcatcagcaatgaagatagattcgctgatgaagaagaagacnnnnnnngaagtgatgcaatcaaagcaaggatgaagaagttaatagaagcatcttt 279  Q
     |||||||| | |||  |||| |   |||||||| | |||||||       |||       ||||||||  | ||| ||| || | ||||||||||||||    
T  22358883 tcttcatcaacgatgcggataaaagggctgatgatgtagaagac-----aagaa-------aatcaaagacatgatcaagcagctgatagaagcatcttt 22358796  T
Q  280 tgacatagaagatgtcattgatgattatatcttccatgaggaacaacatg 329  Q
    | ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  22358795 tcacatagaagatgtcattgatgattatatctttcttgaggaacaacatg 22358746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 309
Target Start/End: Complemental strand, 22459407 - 22459220
Alignment:
Q  119 atgattaggggtgtcccaaaagaaattgcatatttgaaagatgaactagagagcatggaagacttcatcagcaatgaagatagattcgctgatgaagaag 218  Q
    ||||||||||||||||||||||||||| || |  ||||||| ||||| || ||||| ||| ||||||||| ||||| ||||||| | |||||||  ||||    
T  22459407 atgattaggggtgtcccaaaagaaatttcagacatgaaagaagaacttgaaagcattgaaaacttcatcaacaatgcagatagaatagctgatgctgaag 22459308  T
Q  219 aagacnnnnnnngaagtgatgcaatcaaagcaaggatgaagaagttaatagaagcatcttttgacatagaagatgtcattgatgattatat 309  Q
    | |||        |||||| | ||||||||||||||| ||| || | |||||||||||||||| |||  |||||||||||||||| |||||    
T  22459307 atgacaatgc---aagtgaaggaatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 22459220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 309
Target Start/End: Complemental strand, 22482388 - 22482201
Alignment:
Q  119 atgattaggggtgtcccaaaagaaattgcatatttgaaagatgaactagagagcatggaagacttcatcagcaatgaagatagattcgctgatgaagaag 218  Q
    ||||||||||||||||||||||||||| || |  ||||||| ||||| || ||||| ||| ||||||||| ||||| ||||||| | |||||||  ||||    
T  22482388 atgattaggggtgtcccaaaagaaatttcagacatgaaagaagaacttgaaagcattgaaaacttcatcaacaatgcagatagaatagctgatgctgaag 22482289  T
Q  219 aagacnnnnnnngaagtgatgcaatcaaagcaaggatgaagaagttaatagaagcatcttttgacatagaagatgtcattgatgattatat 309  Q
    | |||        |||||| | ||||||||||||||| ||| || | |||||||||||||||| |||  |||||||||||||||| |||||    
T  22482288 atgacaatgc---aagtgaaggaatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 22482201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 22468926 - 22468818
Alignment:
Q  80 cgtgatcatttgcttccactattaaaggtagcattcagcatgattaggggtgtcccaaaagaaattgcatatttgaaagatgaactagagagcatggaag 179  Q
    ||||||||||||||||| || || |||| |||||||| |||||||||||||  ||| |||||||||| | | ||||||||||||||||| ||||| ||||    
T  22468926 cgtgatcatttgcttccgctcttcaaggaagcattcaacatgattaggggtaacccgaaagaaattgtagaattgaaagatgaactagaaagcattgaag 22468827  T
Q  180 acttcatca 188  Q
    |||||||||    
T  22468826 acttcatca 22468818  T

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Target: chr3; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 22354350 - 22354247
Alignment:
Q  82 tgatcatttgcttccactattaaaggtagcattcagcatgattaggggtgtcccaaaagaaattgcatatttgaaagatgaactagagagcatggaagac 181  Q
    |||||||||||||||||| || |||| ||||||||  |||||||||| ||||||||||||||||||| | |||||||| ||||| || ||||| ||||||    
T  22354350 tgatcatttgcttccactcttgaaggaagcattcaatatgattagggttgtcccaaaagaaattgcagaattgaaagaggaacttgaaagcattgaagac 22354251  T
Q  182 ttca 185  Q
    ||||    
T  22354250 ttca 22354247  T

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Target: chr3; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 327
Target Start/End: Complemental strand, 22431977 - 22431891
Alignment:
Q  241 aatcaaagcaaggatgaagaagttaatagaagcatcttttgacatagaagatgtcattgatgattatatcttccatgaggaacaaca 327  Q
    ||||||||||| ||| ||  || | ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  22431977 aatcaaagcaaagatcaaacagctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaaca 22431891  T

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Target: chr3; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 22445557 - 22445499
Alignment:
Q  13 aatattagcaaattaaaatcaaatatacaacaaaatgtgtgactgtaacgctgcacttg 71  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||    
T  22445557 aatattagcaaattgaaatcaaatatacaacaaaatgtgtgaccgtaaagctgcacttg 22445499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 22207487 - 22207612
Alignment:
Q  77 gctcgtgatcatttgcttccactattaaaggtagcattcagcatgattaggggtgtcccaaaagaaattgcatatttgaaagatgaactagagagcatgg 176  Q
    ||||| || |||||||||||||||||||||| || |  ||  ||||| || ||||||||||||||| ||||| |  ||||| |||||||||| ||||| |    
T  22207487 gctcgggaccatttgcttccactattaaaggaagtaaccaatatgataagaggtgtcccaaaagaagttgcagacatgaaaaatgaactagaaagcattg 22207586  T
Q  177 aagacttcatcagcaatgaagataga 202  Q
    |||||||||||| ||||  |||||||    
T  22207587 aagacttcatcaacaatacagataga 22207612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 22632935 - 22632847
Alignment:
Q  18 tagcaaattaaaatcaaatatacaacaaaatgtgtga------ctgtaacgctgcacttgcctgcgctcgtgatcatttgcttccacta 100  Q
    |||||||||||||||||| ||||||||||||||||||       ||| |||||||| || |||||||| ||||||||||||||||||||    
T  22632935 tagcaaattaaaatcaaagatacaacaaaatgtgtgataaaatgtgtgacgctgcattttcctgcgcttgtgatcatttgcttccacta 22632847  T

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Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 22370946 - 22370901
Alignment:
Q  274 atcttttgacatagaagatgtcattgatgattatatcttccatgag 319  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||    
T  22370946 atctttttacatagaagatgtcattgatgaatatatcttccatgag 22370901  T

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Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 22468752 - 22468691
Alignment:
Q  266 atagaagcatcttttgacatagaagatgtcattgatgattatatcttccatgaggaacaaca 327  Q
    ||||||||||||| | |||||||||||||  |||||||||||||||| | ||||||||||||    
T  22468752 atagaagcatcttatcacatagaagatgtggttgatgattatatcttacttgaggaacaaca 22468691  T

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Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 22354434 - 22354360
Alignment:
Q  16 attagcaaattaaaatcaaatatacaacaaaatgtgtgactgtaacgctgcacttgcctgcgctcgtgatcatttgcttcc 96  Q
    ||||||||||| |||||||| |||||||||||||||||      || |||||||| ||||||| |||||||| ||||||||    
T  22354434 attagcaaattcaaatcaaagatacaacaaaatgtgtg------acactgcactttcctgcgcccgtgatcacttgcttcc 22354360  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 22371185 - 22371143
Alignment:
Q  13 aatattagcaaattaaaatcaaatatacaacaaaatgtgtgac 55  Q
    |||||||||||||| ||||| || |||||||||||||||||||    
T  22371185 aatattagcaaattcaaatcgaagatacaacaaaatgtgtgac 22371143  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 29611202 - 29611145
Alignment:
Q  89 ttgcttccactattaaaggtagcattcagcatgattaggggtgtcccaaaagaaattg 146  Q
    |||||||||| |||||||| ||||   | |||||||||||||||||||||||||||||    
T  29611202 ttgcttccaccattaaaggaagcaacaaacatgattaggggtgtcccaaaagaaattg 29611145  T

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