View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_18 (Length: 336)
Name: NF17959_low_18
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 26596502 - 26596306
Alignment:
| Q |
17 |
aacatcaatgtcttaagtataagcacttgaaacaagtgtgtttgaaaagactctgcagaatcagaacgtgtgatcaatttagtaagtataaaaatccaaa |
116 |
Q |
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| T |
26596502 |
aacatcaatgtcttaagtataagcacttgaaacaagtgtgtttgaaaagactctgcagaatcagaacgtgtgatcaatttagtaagtataaaaatccaaa |
26596403 |
T |
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| Q |
117 |
actcaaaggaattgtttagagagnnnnnnnntactgattcttggtggctttccatccatctatccaaagagatgattaatgatttttaaaatgaagaaga |
216 |
Q |
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| T |
26596402 |
actcaaaggaattgtttagagag-aaaaaaatactgcttcttggtggctttccatccatctatccaaagag-------atgatttttaaaatgaagaaga |
26596311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 26611609 - 26611529
Alignment:
| Q |
17 |
aacatcaatgtcttaagtataagcacttgaaacaagtgtgtttgaaaagactctgcagaatcagaacgtgtgatcaattta |
97 |
Q |
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| T |
26611609 |
aacatcaatgtcgcaagtatgagcacttgaaacaaatgtgtttgaaaagactctgcagaatcagaacgtgtgatctattta |
26611529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 26596245 - 26596165
Alignment:
| Q |
240 |
taatggattcattttttaacaaaaagatcatataattaaaattttnnnnnnntcttgatgtctttgacataccctaatatt |
320 |
Q |
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| T |
26596245 |
taatggattcattttttaacaaaaagatcatataattaaaaattttaaaaaatcttgatgtctttgacataccctaatatt |
26596165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 26604083 - 26604026
Alignment:
| Q |
17 |
aacatcaatgtcttaagtataagcacttgaaacaagtgtgtttgaaaagactctgcag |
74 |
Q |
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| T |
26604083 |
aacatcaatgtcacaagtatgagcacttgaaacaagtgtgtttcaaaagactctgcag |
26604026 |
T |
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