View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_20 (Length: 329)
Name: NF17959_low_20
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 39225470 - 39225787
Alignment:
| Q |
1 |
taactacatagaattgaatnnnnnnngaaggataaattaggctcatatctaatcttttaaagcacatttgaatagtggaattcagctgtaacatatttgt |
100 |
Q |
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| T |
39225470 |
taactacatagaattgaataaaaaaagaaggataaattaggctcatatctaatcttttaaagcacatttgaatagtggaattcagctgtaacatatttgt |
39225569 |
T |
|
| Q |
101 |
tcactgaaaatggagggcataaacatcttctcatcttccctcatccataagtaatgttaactcccatatatcaaataacatcaacgacatgtattatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39225570 |
tcactgaaaatggagggcataaacatcttctcatcttccctcatccataagtaatgttaactcccatatatcaaataacatcaacgacatgtattatttc |
39225669 |
T |
|
| Q |
201 |
catgttatacttggctatttctcatttccctatctaatgtcaaccatgatactgtgtaccctatggaatttactgcttcgttaaaaataagcacacccaa |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39225670 |
catgtcatacttggctatttctcatttccctatctaatgtcaaccatgatactgtgtaccctatgg--tttactgcttcgttaaaaataagcacacccaa |
39225767 |
T |
|
| Q |
301 |
caaaaaatgaacctgatgat |
320 |
Q |
| |
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|||||||||||||||||||| |
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| T |
39225768 |
caaaaaatgaacctgatgat |
39225787 |
T |
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