View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17959_low_22 (Length: 299)

Name: NF17959_low_22
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17959_low_22
NF17959_low_22
[»] chr8 (7 HSPs)
chr8 (18-188)||(31877211-31877381)
chr8 (48-190)||(31547742-31547884)
chr8 (116-192)||(31544656-31544732)
chr8 (116-192)||(31559518-31559594)
chr8 (75-190)||(31556471-31556586)
chr8 (18-111)||(31561316-31561409)
chr8 (197-261)||(31877117-31877181)
[»] chr7 (2 HSPs)
chr7 (114-192)||(30034433-30034511)
chr7 (116-189)||(45868101-45868174)
[»] chr1 (2 HSPs)
chr1 (107-189)||(38624993-38625075)
chr1 (115-190)||(46613935-46614010)
[»] chr5 (3 HSPs)
chr5 (115-192)||(32361824-32361901)
chr5 (115-192)||(32379055-32379132)
chr5 (113-189)||(40640266-40640342)
[»] chr4 (3 HSPs)
chr4 (115-191)||(38507765-38507841)
chr4 (116-192)||(55290062-55290138)
chr4 (113-188)||(30161974-30162049)
[»] chr2 (6 HSPs)
chr2 (116-200)||(6493518-6493602)
chr2 (116-192)||(8328450-8328526)
chr2 (114-188)||(18229430-18229504)
chr2 (116-188)||(9596926-9596998)
chr2 (116-188)||(33994623-33994695)
chr2 (116-188)||(21281552-21281623)
[»] chr3 (2 HSPs)
chr3 (116-188)||(32053543-32053615)
chr3 (113-188)||(50683112-50683187)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 31877381 - 31877211
Alignment:
Q  18 atttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaaaattcacgaaagcaattaataagcagcacaaaactatcaccaagc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| |||| ||| |||||| ||||||||| |||||    
T  31877381 atttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaagtctcacaaaagccattactaaacagcaccaaactatcatcaagc 31877282  T
Q  118 ggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31877281 ggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 31877211  T

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Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 31547742 - 31547884
Alignment:
Q  48 ctagaaaattgtaaaagtattctaaaattcacgaaagcaattaataagcagcacaaaactatcaccaagcggggatagctcagttgggagagcgtcagac 147  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31547742 ctagaaaattgtaaaagtattctaaaattcacaaaagcaattagtaagcagcacgaaactatcaccaagcggggatagctcagttgggagagcgtcagac 31547841  T
Q  148 tgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31547842 tgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatt 31547884  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 31544656 - 31544732
Alignment:
Q  116 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544656 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 31544732  T

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Target: chr8; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 31559518 - 31559594
Alignment:
Q  116 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31559518 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 31559594  T

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Target: chr8; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 31556471 - 31556586
Alignment:
Q  75 ttcacgaaagcaattaataagcagcacaaaactatcaccaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgat 174  Q
    |||||||| |||||||  || |||||||||   |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  31556471 ttcacgaatgcaattacaaatcagcacaaagtaatcatcatgcggggatagctcagttgggagagcgtcagattgaagatctgaaggtcgcgtgtttgat 31556570  T
Q  175 ccacgctcaccgcatt 190  Q
    ||||||||||||||||    
T  31556571 ccacgctcaccgcatt 31556586  T

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Target: chr8; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 31561316 - 31561409
Alignment:
Q  18 atttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaaaattcacgaaagcaattaataagcagcacaaaactatca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| |||| ||| |||||| |||||||||    
T  31561316 atttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaattctcacaaaagccattactaaacagcaccaaactatca 31561409  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 31877181 - 31877117
Alignment:
Q  197 tttttaattaaaaaacctgtatatatggaataataattgcttatgcattgccaataaatttggtt 261  Q
    |||||||||| |||| |||||||||||| ||||||||| | ||||||||| |  |||||||||||    
T  31877181 tttttaattataaaagctgtatatatggtataataattacatatgcattgactttaaatttggtt 31877117  T

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Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 30034511 - 30034433
Alignment:
Q  114 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034511 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 30034433  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 45868174 - 45868101
Alignment:
Q  116 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45868174 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 45868101  T

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Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 38625075 - 38624993
Alignment:
Q  107 tatcaccaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 189  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38625075 tatcaacaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 38624993  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 46613935 - 46614010
Alignment:
Q  115 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatt 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46613935 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatt 46614010  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 32361901 - 32361824
Alignment:
Q  115 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361901 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 32361824  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 32379132 - 32379055
Alignment:
Q  115 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379132 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 32379055  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 40640342 - 40640266
Alignment:
Q  113 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40640342 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 40640266  T

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Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 38507841 - 38507765
Alignment:
Q  115 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38507841 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattt 38507765  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 55290138 - 55290062
Alignment:
Q  116 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55290138 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 55290062  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 30161974 - 30162049
Alignment:
Q  113 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161974 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 30162049  T

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Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 6493518 - 6493602
Alignment:
Q  116 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattttactatttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  6493518 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttaacaatttt 6493602  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 8328526 - 8328450
Alignment:
Q  116 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328526 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 8328450  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 18229430 - 18229504
Alignment:
Q  114 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18229430 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 18229504  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 9596926 - 9596998
Alignment:
Q  116 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9596926 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 9596998  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 33994695 - 33994623
Alignment:
Q  116 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33994695 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 33994623  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 21281623 - 21281552
Alignment:
Q  116 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 188  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||| ||||||||||    
T  21281623 gcggggatagctcagttgggagagcctcaga-tgaagatccgaaggtcgcgtgtttgatccatgctcaccgca 21281552  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 32053615 - 32053543
Alignment:
Q  116 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32053615 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 32053543  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 50683187 - 50683112
Alignment:
Q  113 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 188  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50683187 caagctgggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 50683112  T

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