View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17959_low_23 (Length: 296)
Name: NF17959_low_23
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_23 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 10049859 - 10050139
Alignment:
| Q |
17 |
attttaaattataaagaaacttcgttacgataaggtacacgcatgaaaaatcatgatactcaccacttgtagtgatgataatttctaactttcnnnnnnn |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10049859 |
attttaaattataaagaaacttcgttacgataaggtacacgcatgaaaaatcatgatactcaccacttgtagtgatgataatttctaactttcttttttt |
10049958 |
T |
|
| Q |
117 |
a-ctaataataatttctatccttaagtaaaaatcatgatactcaccaattcatgtcgtttttatnnnnnnnncaaacacttgtcttatcttttttctaat |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10049959 |
tgctaataataatttctatctttaagtaaaaatcatgatactcaccaattcatgtcgtttttattaaaaaaacaaacacttgtcttatcttttttctaat |
10050058 |
T |
|
| Q |
216 |
tattaaagattcaaataagtaagcaaagagttgtgtctaacggagaggcaagatttccataatgtgggttgagttcctatt |
296 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10050059 |
tattaaagattgaaataagtaagcaaagagttgtgtctaacagagaggcaagatttccataatgtgggttgagttcctatt |
10050139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University