View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17959_low_26 (Length: 284)
Name: NF17959_low_26
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 14026639 - 14026369
Alignment:
| Q |
1 |
aaccttttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataaattgaagggtgtggcgttta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
14026639 |
aaccttttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcatacaataaactgaagggtgtggcgttta |
14026540 |
T |
|
| Q |
101 |
aatccttcatgaatttatgtgccttacgttctttagatattgaagaaaacaatttaactgaagaccttcaatcaattcttcacaatttgtctggaggttg |
200 |
Q |
| |
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| |||||||||||| |||| |||||||||| |||| | | | | ||||||||| | ||||| |||||| || ||||||||||||||||||||||||| |
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| T |
14026539 |
agtccttcatgaatgtatgcaccttacgttcattagttttgtatgcaaacaatttcaaagaagaacttcaaacagttcttcacaatttgtctggaggttg |
14026440 |
T |
|
| Q |
201 |
tgttagaaactcacttcaagtgttagaccttagtttcaatggaatcactggaacactacctgacctttctg |
271 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| |
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| T |
14026439 |
tgttagaaactcacttcaagtgttagacctcagtgataacagaatcactggaacactacctgacctttctg |
14026369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 14016525 - 14016256
Alignment:
| Q |
1 |
aaccttttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataaattgaagggtgtggcgttta |
100 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| ||||||||| || ||||||| ||||||||||||| |||||||||||||| ||||| |||| |
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| T |
14016525 |
aaccttttggaggttcttccatcatatggttatggcatagtgatgaagtcccttcaggtacttgacctatcaaataataaattgaagggcgtggcattta |
14016426 |
T |
|
| Q |
101 |
aatccttcatgaatttatgtgccttacgttctttagatattgaagaaaacaatttaactgaagaccttcaatcaattcttcacaatttgtctggaggttg |
200 |
Q |
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| T |
14016425 |
aatccttcatgaatttatgtgccttacgttctttagatattgaagaaaacaatttcacagaagaccttcaattaatttttcactatttgtctagtacttg |
14016326 |
T |
|
| Q |
201 |
tgttagaaactcacttcaagtgttagaccttagtttcaatggaatcactggaacactacctgacctttct |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||| |
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|
| T |
14016325 |
tgttagaaactcacttcaagtgttagacctccgttctaatggaatcactggaactatacccgacctttct |
14016256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 13942509 - 13942263
Alignment:
| Q |
1 |
aaccttttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataaattgaagggtgtggcgttta |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
13942509 |
aaccgtttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcatacaataaattgaagggtgtggcattta |
13942410 |
T |
|
| Q |
101 |
aatccttcatgaatttatgtgccttacgttctttagatattgaagaaaacaatttaactgaagaccttcaatcaattcttcacaatttgtctggaggttg |
200 |
Q |
| |
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|||||||||||||| |||| |||||||||||||| || | |||||||||| || |||||||||||| ||||||||| |||||||||| | ||||| |
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| T |
13942409 |
aatccttcatgaatgtatgcaccttacgttctttaaatctgattcaaaacaatttcacagaagaccttcaaacaattcttcgcaatttgtctagcggttg |
13942310 |
T |
|
| Q |
201 |
tgttagaaactcacttcaagtgttagaccttagtttcaatggaatca |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
13942309 |
tgttagaaactcacttcaagtgttagacctcagttctaatggaatca |
13942263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 13471624 - 13471870
Alignment:
| Q |
8 |
tggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataaattgaagggtgtggcgtttaaatcctt |
107 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||| | || ||||||| ||||||||||| | |||||||||||||||||||| ||||||||||| |
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|
| T |
13471624 |
tggaggctcccccatcacatggttatggcacagtgatacagtctcttcaggtacttgacctatcatataataaattgaagggtgtggcatttaaatcctt |
13471723 |
T |
|
| Q |
108 |
catgaatttatgtgccttacgttctttagatattgaagaaaacaatttaactgaagaccttcaatcaattcttcacaatttgtctggaggttgtgttaga |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| |||| |||||||||||||| | |||||||||||| |
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|
| T |
13471724 |
catgaatttatgcgccttacgttctttagatatggaagaaaacaatttaactgaagacctgcaattaattattcacaatttgtctagtggttgtgttaga |
13471823 |
T |
|
| Q |
208 |
aactcacttcaagtgttagaccttagtttcaatggaatcactggaac |
254 |
Q |
| |
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|| |||||| ||||| || |||| ||| ||||||||||||||||| |
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|
| T |
13471824 |
aattcacttgaagtgctaaacctcggttggaatggaatcactggaac |
13471870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 14048720 - 14048486
Alignment:
| Q |
20 |
catcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataaattgaagggtgtggcgtttaaatccttcatgaatttatg |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||||||| | ||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
14048720 |
catcatatagttatggcacagtgatgaagtcccttcaggtgcttgacctatcacataataaattgaagggtggggcatttaaatccttcatgaatttatg |
14048621 |
T |
|
| Q |
120 |
tgccttacgttctttagatatt-gaagaaaacaatttaactgaagaccttcaatcaattcttcacaatttgtctggaggttgtgttagaaactcacttca |
218 |
Q |
| |
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||||||||||||||||||||| || |||||||||| ||||||||||| |||||||| |||||||||||||| | ||||||||||||||||| |||| |
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| T |
14048620 |
cgccttacgttctttagatattaaaaaaaaacaatttccctgaagacctttaatcaattattcacaatttgtctagtggttgtgttagaaactcgtttca |
14048521 |
T |
|
| Q |
219 |
agtgttagaccttagtttcaatggaatcactggaa |
253 |
Q |
| |
|
||||||||| || ||||| |||| ||||||||||| |
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|
| T |
14048520 |
agtgttagatctcagttttaatgaaatcactggaa |
14048486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 97 - 270
Target Start/End: Complemental strand, 14111825 - 14111652
Alignment:
| Q |
97 |
tttaaatccttcatgaatttatgtgccttacgttctttagatattgaagaaaacaatttaactgaagaccttcaatcaattcttcacaatttgtctggag |
196 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| || ||| | | ||||||||||||||||||||| |||||||||||||| | | |
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|
| T |
14111825 |
tttaaatccttcgtgaatttatgtgccttacgttctttagatattaaattcaacgaagtcactgaagaccttcaatcaattattcacaatttgtctagtg |
14111726 |
T |
|
| Q |
197 |
gttgtgttagaaactcacttcaagtgttagaccttagtttcaatggaatcactggaacactacctgacctttct |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14111725 |
gttgtgttagaaactcacttcaagtgttagaccttagtttcaatggaatcactggaacactacctgacctttct |
14111652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 13891630 - 13891894
Alignment:
| Q |
7 |
ttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataaattgaagggtgtggcgtttaaatcct |
106 |
Q |
| |
|
||||||| ||||||||| ||| |||||| ||||||||| || ||| ||| ||||||| ||| | |||| ||||||||||| || |||||||| || |
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|
| T |
13891630 |
ttggaggctcctccatccaatgtctatggcttagtgatgaagtctcttgaggtacttgacctgtcagaaaatagattgaagggtggggtgtttaaattct |
13891729 |
T |
|
| Q |
107 |
tcatgaatttatgtgccttacgttctttagatattgaag-aaaacaatttaactgaagaccttcaatcaattcttcacaatttgtctggaggttgtgtta |
205 |
Q |
| |
|
|||||||| ||||| || ||| ||||||| | |||| ||||||||||||| |||||||||||||||||| |||||||||||||||| || ||||||| |
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|
| T |
13891730 |
tcatgaatgtatgtaccatacaatctttaggt-ttgagtcaaaacaatttaacagaagaccttcaatcaattattcacaatttgtctggtggatgtgtta |
13891828 |
T |
|
| Q |
206 |
gaaactcacttcaagtgttagaccttagtttcaatggaatcactggaacactacctgacctttctg |
271 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||||||| |
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|
| T |
13891829 |
gaaactcacttcaagtgttagaccttggttggaatggaatcactggaggactacccgacctttctg |
13891894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 14086102 - 14085844
Alignment:
| Q |
11 |
aggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataaattgaagggtgtggcgtttaaatccttcat |
110 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| ||||| || ||| |||| |||||||||| || |||| ||| | |||| || ||||||||| | || |
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|
| T |
14086102 |
aggatcctccatcatatgactatggcatagttatgaagtctcttgaggaacttgacctatctaataatagattagaaggtggggtctttaaatcccttat |
14086003 |
T |
|
| Q |
111 |
gaatttatgtgccttacgttctttagatattgaagaaaacaatttaactgaagaccttcaatcaattcttcacaatttgtctggaggttgtgttagaaac |
210 |
Q |
| |
|
|||| |||| || |||| |||||||| | || ||||||||| | |||||||||||| |||||||||| ||||||||| | |||||||| |||||| |
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|
| T |
14086002 |
gaatgtatgcaccctacgctctttagacttgcaaacaaacaatttcatagaagaccttcaaacaattcttcaaaatttgtctagtggttgtgtcagaaac |
14085903 |
T |
|
| Q |
211 |
tcacttcaagtgttagaccttagtttcaatggaatcactggaacactacctgacctttc |
269 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
14085902 |
tcacttcaagtgttagacctcagttataatggaatcactggaactttacccgacctttc |
14085844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 13861453 - 13861676
Alignment:
| Q |
7 |
ttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggaga-ttgacctatcaaacaataaattgaagggtgtggcgtttaaatcc |
105 |
Q |
| |
|
||||||| |||||||||| || ||||||| ||||||||| || ||| || ||| ||| ||||||| |||| ||||||||||| || |||||||||| |
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|
| T |
13861453 |
ttggaggctcctccatcaattgactatggcatagtgatgaattctcttgag-agacttggcctatcaggtaatagattgaagggtggggtgtttaaatcc |
13861551 |
T |
|
| Q |
106 |
ttcatgaatttatgtgccttacgttctttagatat---tgaagaaaacaatttaactgaagaccttcaatcaattcttcacaatttgtctggaggttgtg |
202 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||| | | ||||||||||||| |||||||||||| ||||||||| ||||||||| | ||||||| |
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|
| T |
13861552 |
ttcatgaatgtatgcaccttaagttctttagatctgagtcgtcaaaacaatttaacagaagaccttcaaataattcttcaaaatttgtctagtggttgtg |
13861651 |
T |
|
| Q |
203 |
ttagaaactcacttcaagtgttaga |
227 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
13861652 |
ttagaaactcactccaagtgttaga |
13861676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 13873920 - 13874138
Alignment:
| Q |
1 |
aaccttttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataaattgaagggtgtggcgttta |
100 |
Q |
| |
|
||||| ||||||||| |||||||||||| |||| || ||| |||| || ||| |||| ||||||||||| | |||| |||||||||| | ||||| |
|
|
| T |
13873920 |
aacctcttggaggattctccatcatatgactatgacatagttatgaggtctcttgaggaacttgacctatcacaaaatagtttgaagggtgggatgttta |
13874019 |
T |
|
| Q |
101 |
aatccttcatgaatttatgtgccttacgttctttagatattgaagaaaacaatttaactgaagaccttcaatcaattcttcacaatttgtctggaggttg |
200 |
Q |
| |
|
||||| ||| ||| |||| ||||||||||||||||| | | ||||||||| || ||| ||||||||||||| |||| |||||||| | ||||| |
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|
| T |
13874020 |
aatccatcagaaatatatgcaccttacgttctttagatctgaatttaaacaatttcacccaaggccttcaatcaattattcatgatttgtctagtggttg |
13874119 |
T |
|
| Q |
201 |
tgttagaaactcacttcaa |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13874120 |
tgttagaaactcacttcaa |
13874138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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