View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_3 (Length: 644)
Name: NF17959_low_3
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 83 - 482
Target Start/End: Complemental strand, 25109475 - 25109057
Alignment:
| Q |
83 |
ctaacattttttatggcttggatgagtccagtgcaacacagactggaagaacaaatgaacattgtggaatatatgctagggcactggtggaactatgtga |
182 |
Q |
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| T |
25109475 |
ctaacattttttatggcttggatgagtccagtgcaacacagactggaagaacaaatgaacattgtggaatatatgctagggcactgttggaactatgtga |
25109376 |
T |
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| Q |
183 |
tgagatgaatttaaaagtcgttaatctatggtctgcaatccaggaaagagaggactggttagatgtcagctttacgtaagtataaatatatt-------- |
274 |
Q |
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| T |
25109375 |
tgagatgaatttgaaagttgttaatctatggtctgcaatccaggaaagagaggactggttagatgtcagctttacgtgagtagaaatattctttatagcc |
25109276 |
T |
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| Q |
275 |
ttatagttgatagtggtactttcaattatagtattttcaacttttac----------ttttttgaatcctacagttatttccttaacatctccaaatctg |
364 |
Q |
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| T |
25109275 |
ttatagtttctagtggtactttcaat--tagtattttccacttttactttttctgcatttttttaatcctacagttatttccttaacatctccaaatatg |
25109178 |
T |
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| Q |
365 |
ttagttgctaacttgcagctatca---acttttgtctatacaaataaaaatgcacatcaatattgctagctaaaccctaaactaattattccacatagac |
461 |
Q |
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| T |
25109177 |
ttagttgctgacttgcagctatcaactacttttgtgtatacaaataaaaatacacatcattattgctagctaaaccctagattaattattccacatagac |
25109078 |
T |
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| Q |
462 |
cccaactcacatccacgtggc |
482 |
Q |
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| T |
25109077 |
cccaactcacatccacgtggc |
25109057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 551 - 631
Target Start/End: Complemental strand, 25108988 - 25108908
Alignment:
| Q |
551 |
gaagatatcaacaaggttgagtctagtggaagaaattagatcagagaacctgacaaatattattattttttgttagggatg |
631 |
Q |
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| T |
25108988 |
gaagatatcaacaaggttgagtctagcggaagaatttagatcagagaacttaataaatattattattttttgttagggatg |
25108908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 25109534 - 25109497
Alignment:
| Q |
19 |
atggaatttctttctagtataattttttattttaaatt |
56 |
Q |
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| T |
25109534 |
atggattttctttctagtataattttttcttttaaatt |
25109497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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