View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_31 (Length: 266)
Name: NF17959_low_31
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 8807288 - 8807514
Alignment:
| Q |
24 |
ggaaggttaactgtttcacaatctgctttacaaagtgaagaatcttcacaatcatacagaccaacaacattatcaactgatacaccaaagtagtttcttc |
123 |
Q |
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| T |
8807288 |
ggaagattaactgtttcacaatctgctttacaaagtgaagaatcttcacaatcatacagaccaacaacattatcaactgatacaccaaagtagtttcttc |
8807387 |
T |
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| Q |
124 |
catcaaaactcctctcaccaaatgaattcaaatcgttgtactgtcgacacgatgaggttcctggaaagtctactaacaaaccatctgaaaagaattccaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8807388 |
catcaaaactcctctcaccaaatgaattcaaatcgttgtactgtcgacacgatgaggttcctggaaagtctactaacaaaccatctgaaaagaattccaa |
8807487 |
T |
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| Q |
224 |
aatgggatagttttgtgaacctatttt |
250 |
Q |
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||||||||||||||||||||||||||| |
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| T |
8807488 |
aatgggatagttttgtgaacctatttt |
8807514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 22923687 - 22923915
Alignment:
| Q |
24 |
ggaaggttaactgtttcacaatctgctttacaaagtgaagaatcttcacaatcatacagaccaacaacattatcaactgatacaccaaa--gtagtttct |
121 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||| |||||| |||||||||| | |||||||| | ||| | |
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| T |
22923687 |
ggaaggttaactgtttcgcaatttgctttacaaagtgaagaaccttcacaatcacagagagcaacaaaattatcaactaagacaccaaattgattttttt |
22923786 |
T |
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| Q |
122 |
tccatcaaaactcctctcaccaaatgaattcaaatcgttgtactgtcgacacgatgaggt-tcctggaaagtctactaacaaaccatctgaaaagaattc |
220 |
Q |
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| |||||||||||||||| ||||| |||||||||||||||| ||||||| || || || |||| ||||||||||||||||| |||| | ||||||| |
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| T |
22923787 |
ttcatcaaaactcctctcttcaaataaattcaaatcgttgtatcgtcgacatgacgatgtatcct-aaaagtctactaacaaacaatctaagaagaattt |
22923885 |
T |
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| Q |
221 |
caaaatgggatagttttgtgaacctatttt |
250 |
Q |
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||| || |||||||||||||||||||||| |
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| T |
22923886 |
caagataagatagttttgtgaacctatttt |
22923915 |
T |
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