View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_33 (Length: 259)
Name: NF17959_low_33
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 23845218 - 23845455
Alignment:
| Q |
19 |
tggaagacttaagtcaaacaccaaaatggattttcctcaagggagctgtggaggaacatgctagaagtggagtcgaagaagaataagcaagaggatatct |
118 |
Q |
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| T |
23845218 |
tggaagacttaagtcaaacaccaaaatggattttcctcaagggagctgtgaaggaacatgctagaagtggagtcgaagaagaataagcaagaggatatct |
23845317 |
T |
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| Q |
119 |
actagacaaagactctggcttcgaagatcatgatgaagacaaggaccttaaggacatgggctcccaaacacaagttaaacttgtgggtgattgttcgt-- |
216 |
Q |
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| T |
23845318 |
accagacgaagactctggcttcgaagatcatgatgaagacaaggaccttaaggacatgggctcctgaacacaagttacacttgtgggtgattgttcgtct |
23845417 |
T |
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| Q |
217 |
----agtaatgtatgatttatgaagtaacatttcttct |
250 |
Q |
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| T |
23845418 |
attatgcaatgtatgatttatgaagtaacattgcttct |
23845455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 28858322 - 28858150
Alignment:
| Q |
23 |
agacttaagtcaaacaccaaaatggattttcctcaagggagctgtggaggaacatgctagaagtggagtcgaagaagaataagcaagaggatatctacta |
122 |
Q |
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| T |
28858322 |
agacttgagtcaaacaccagaattaattcttcttaaaggagttgtggatgcatatgctagaa-tgaagtcgaagaagaagaagcaagaggatatctgcca |
28858224 |
T |
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| Q |
123 |
gacaaagactctggcttcgaagatcatgatgaagacaagga-ccttaaggacatgggctcccaaacacaagtta |
195 |
Q |
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| T |
28858223 |
gatgaagattctgacttcgaagatgatgaggaaggcaaggagcctgaaggttaggggctcccgagcacaagtta |
28858150 |
T |
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