View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_34 (Length: 257)
Name: NF17959_low_34
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 322062 - 322280
Alignment:
| Q |
17 |
cttcccatgacatcatcggattgtgnnnnnnnccttgttataataataaatagttattgattggctaattactaattcaattaataatgatgaattgcag |
116 |
Q |
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| T |
322062 |
cttcccatgacatcataggattgtgttttttttcttcttataataataaatagttattgattggctaattactaatt-----aataatgatgaattgcag |
322156 |
T |
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| Q |
117 |
aatatgcttatacattgagggtagatgaaaagagtgatgtttatagttttggagttgttctactagagcttctaacggggaggaaaccagtgggggattt |
216 |
Q |
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| T |
322157 |
aatatgcttatacattgagggtagatgaaaagagtgatgtttatagttttggagttgttctactagagcttctaacggggaggaaaccagtgggggattt |
322256 |
T |
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| Q |
217 |
tggagaaggtgtagatcttgtaca |
240 |
Q |
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| T |
322257 |
tggagaaggtgtggatcttgtaca |
322280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 16737023 - 16737095
Alignment:
| Q |
111 |
ttgcagaatatgcttatacattgagggtagatgaaaagagtgatgtttatagttttggagttgttctactaga |
183 |
Q |
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| T |
16737023 |
ttgcagaatatgcatacacattgaaagttgatgagaaaagtgatgtgtatagttttggagttgtgctgctaga |
16737095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 180
Target Start/End: Complemental strand, 5501237 - 5501208
Alignment:
| Q |
151 |
tgatgtttatagttttggagttgttctact |
180 |
Q |
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| T |
5501237 |
tgatgtttatagttttggagttgttctact |
5501208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 23833135 - 23833172
Alignment:
| Q |
146 |
aagagtgatgtttatagttttggagttgttctactaga |
183 |
Q |
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| T |
23833135 |
aagagtgatgtctatagttttggagttgtactactaga |
23833172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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