View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_35 (Length: 256)
Name: NF17959_low_35
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 39225374 - 39225163
Alignment:
| Q |
16 |
ctgtgctacttcttaaccactgttgaggaaggcatttataactgaaaccagtttctctgttcaagtttaaaatgacatt-gataaaaataatttgacatg |
114 |
Q |
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| T |
39225374 |
ctgtgctacttcttaaccactgttgaggaaggcatttataaat----------------ttcaagtttaaaatgacatttgataaaaataatttgacatg |
39225291 |
T |
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| Q |
115 |
aattcattgaggaacttgtctcttgtttaacaaacacaagcactctctaccccaacaacagtagtgtacaagttagcaggtttccattaccccgtttgtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
39225290 |
aattcattgaggaacttgtctcttgtttaacaaacacaagcactctctaccccaacaacagtagtgtataagttagcaggtttccattaccccatttgtt |
39225191 |
T |
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| Q |
215 |
tacattagcttgtttcagcccaaaaact |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
39225190 |
tacattagcttgtttcagcccaaaaact |
39225163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 33563908 - 33563827
Alignment:
| Q |
161 |
ctaccccaacaacagtagtgtacaagttagcaggtttccattaccccgtttgtttacattagcttgtttcagcccaaaaact |
242 |
Q |
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|||||||||||| |||||||| ||||||||| ||||| |||||||| ||| |||||||||| ||||| || ||||||||| |
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| T |
33563908 |
ctaccccaacaatagtagtgtgtaagttagcacgtttcgattaccccatttctttacattaggttgttccactccaaaaact |
33563827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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