View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17959_low_39 (Length: 240)

Name: NF17959_low_39
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17959_low_39
NF17959_low_39
[»] chr8 (7 HSPs)
chr8 (18-240)||(2505508-2505730)
chr8 (117-240)||(2512129-2512252)
chr8 (117-240)||(2496827-2496950)
chr8 (98-240)||(2516400-2516542)
chr8 (125-240)||(2429497-2429612)
chr8 (103-240)||(2435818-2435955)
chr8 (111-240)||(2432465-2432594)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 2505730 - 2505508
Alignment:
Q  18 aatgcaacattgaaaaggtcggtttatgtttattggcataaaaaagtatagtttagcaacacgagacacactagtgacatgtggttatcattttatgtga 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2505730 aatgcaacattgaaaaggtcagtttatgtttattggcataaaaaagtatagtttagcaacacgagacacactagtgacatgtggttatcattttatgtga 2505631  T
Q  118 atcaggcactttccagaaggcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacatgagattacaaggtcgcatac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2505630 atcaggcactttccagaaggcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacatgagattacaaggtcgcatac 2505531  T
Q  218 ctgtgtgtggaatgatctcacag 240  Q
    |||||||||||||||||||||||    
T  2505530 ctgtgtgtggaatgatctcacag 2505508  T

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Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 2512252 - 2512129
Alignment:
Q  117 aatcaggcactttccagaaggcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacatgagattacaaggtcgcata 216  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| | |||| |||||||||    
T  2512252 aatcaggcactttccagaaggaattgacgtttactttgagaacgttggaggcaagacacttgatgccgtactcttgaacatgaaactacatggtcgcata 2512153  T
Q  217 cctgtgtgtggaatgatctcacag 240  Q
    ||||||||||||||||||||||||    
T  2512152 cctgtgtgtggaatgatctcacag 2512129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 2496950 - 2496827
Alignment:
Q  117 aatcaggcactttccagaaggcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacatgagattacaaggtcgcata 216  Q
    |||||||||||| || |||||||||||| ||||||||||||| || || ||||||||||||||||| |||||||||||||||||| | || || ||||||    
T  2496950 aatcaggcacttccctgaaggcattgatatttactttgagaatgttggaggcaagacacttgatgctgtactcttgaacatgagagtccacggccgcata 2496851  T
Q  217 cctgtgtgtggaatgatctcacag 240  Q
    ||||  ||||||||||||||||||    
T  2496850 cctgcatgtggaatgatctcacag 2496827  T

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Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 2516542 - 2516400
Alignment:
Q  98 gtggttatcattttatgtgaatcaggcactttccagaaggcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacat 197  Q
    |||| ||||| ||||||| ||| ||| |||||||||||||||||||  ||||||||||||| || || || |||||||||||||| ||||||||||| ||    
T  2516542 gtggatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactcttgaatat 2516443  T
Q  198 gagattacaaggtcgcatacctgtgtgtggaatgatctcacag 240  Q
    || | | || || ||||||||||||||||||||||||||||||    
T  2516442 gaaactccatggccgcatacctgtgtgtggaatgatctcacag 2516400  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 2429497 - 2429612
Alignment:
Q  125 actttccagaaggcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacatgagattacaaggtcgcatacctgtgtg 224  Q
    |||||||||||||||||||  ||||||||||||| || || || |||||||||||||| ||||||||||| |||| | | || || || |||||||||||    
T  2429497 actttccagaaggcattgacatttactttgagaatgtggggggaaagacacttgatgctgtactcttgaatatgaaactccatgggcggatacctgtgtg 2429596  T
Q  225 tggaatgatctcacag 240  Q
    ||||||||||||||||    
T  2429597 tggaatgatctcacag 2429612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 2435818 - 2435955
Alignment:
Q  103 tatcattttatgtgaatcaggcactttccagaaggcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacatgagat 202  Q
    ||||| |||||||  || ||| |||||||||||||||||||  ||||||||||||| || ||||| || ||||||||||| ||||| ||||| ||||||     
T  2435818 tatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatgagag 2435917  T
Q  203 tacaaggtcgcatacctgtgtgtggaatgatctcacag 240  Q
    | || || |||||||||||  |||||||||||||||||    
T  2435918 tccatggccgcatacctgtaagtggaatgatctcacag 2435955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 2432465 - 2432594
Alignment:
Q  111 tatgtgaatcaggcactttccagaaggcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacatgagattacaaggt 210  Q
    ||||| ||| ||| |||||||||||||||||||  ||||||||||||| || || || ||||||||||| || ||||||||||| |||| | | || ||     
T  2432465 tatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgacgctgtactcttgaatatgaaactccatggc 2432564  T
Q  211 cgcatacctgtgtgtggaatgatctcacag 240  Q
    |||||||||||  |||||||||||||||||    
T  2432565 cgcatacctgtaagtggaatgatctcacag 2432594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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