View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_43 (Length: 236)
Name: NF17959_low_43
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 32598280 - 32598497
Alignment:
| Q |
1 |
aatatctctacccaaaattaggttgttacttaggtatgagatcaacggggctttattaccatcttttctgttgaatacttaatatctatcacgtttta-t |
99 |
Q |
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| T |
32598280 |
aatatctccacccaaaattaggttgttacttaggtatgagatcaaatgggctttattaccatcttttgtgttgaatacttaatatctatcacgttttatt |
32598379 |
T |
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| Q |
100 |
ttttnnnnnnnntattatgtattcaacaccaaagatgataaatacatgctagatattaagtgcactaaagtggaaaacagaagaacaagcatgaaatatg |
199 |
Q |
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| T |
32598380 |
ttttaaaaaaaatattatgtattcaacacaaaaaatggtaaatacatgctagatattaagtgcattaaagtaggaaacagaacaataagcatgaaatatg |
32598479 |
T |
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| Q |
200 |
aagtacaacgaggagaag |
217 |
Q |
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| T |
32598480 |
aagtacaatgaggagaag |
32598497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32603431 - 32603517
Alignment:
| Q |
1 |
aatatctctacccaaaattaggttgttacttaggtatgagatcaacggggctttattaccatcttttctgttgaatacttaatatcta |
88 |
Q |
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||||| ||||||||||||||||||||||||| || |||||| | |||||| ||||||||||||| | ||||||||||||||||| |
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| T |
32603431 |
aatatatctacccaaaattaggttgttacttgggcatgaga-cctgtgggcttcattaccatcttttgtaatgaatacttaatatcta |
32603517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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