View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_44 (Length: 236)
Name: NF17959_low_44
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9649747 - 9649969
Alignment:
| Q |
1 |
cctgaggcaacattccaccaagcaatgatgaacaaagtgctgtgatagccccggcatttataatgtatctgtaattataatcatgaaaaatgacttaaga |
100 |
Q |
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| T |
9649747 |
cctgaggcaacattccaccaagcaatgatgaacaaagtgctgtgatagccccggcatttataatgtatctgtaattacaatcatgaaaaatgacttaaga |
9649846 |
T |
|
| Q |
101 |
aaactaatgcatactcagaaaatggtattttaagaatatttatacacaaaatggacacattgaatacgccacgtagaaattcgtaatagagttgcaaaat |
200 |
Q |
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| T |
9649847 |
aaactaatgcatactcagaaaatggtattttaagaatatttatacacaaaatggacacattgaatacgctacgtagaaattcgtaatagagttgcaaaat |
9649946 |
T |
|
| Q |
201 |
tgtaaaacttacgcagcccattg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
9649947 |
tgtaaaacttacgcagcccattg |
9649969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9655764 - 9655986
Alignment:
| Q |
1 |
cctgaggcaacattccaccaagcaatgatgaacaaagtgctgtgatagccccggcatttataatgtatctgtaattataatcatgaaaaatgacttaaga |
100 |
Q |
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| T |
9655764 |
cctgaggcaacattccaccaagcaatgatgaacaaagtgctgtgatagccccggcatttataatgtatctgtaattacaatcatgaaaaatgacttaaga |
9655863 |
T |
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| Q |
101 |
aaactaatgcatactcagaaaatggtattttaagaatatttatacacaaaatggacacattgaatacgccacgtagaaattcgtaatagagttgcaaaat |
200 |
Q |
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| T |
9655864 |
aaactaatgcatactcagaaaatggtattttaagaatatttatacacaaaatggacacattgaatacgctacgtagaaattcgtaatagagttgcaaaat |
9655963 |
T |
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| Q |
201 |
tgtaaaacttacgcagcccattg |
223 |
Q |
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| T |
9655964 |
tgtaaaacttacgcagcccattg |
9655986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 9615075 - 9615167
Alignment:
| Q |
1 |
cctgaggcaacattccaccaagcaatgatgaacaaagtgctgtgatagccccggcatttataatgtatctgtaattataatcatgaaaaatga |
93 |
Q |
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|||| ||||||||| |||||||||||||| || |||||||| | |||||| |||||||||||||||||||||| | ||||||||||||||| |
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| T |
9615075 |
cctggggcaacattgttccaagcaatgatgagcatagtgctgtaagagccccagcatttataatgtatctgtaatcacaatcatgaaaaatga |
9615167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 9639699 - 9639773
Alignment:
| Q |
1 |
cctgaggcaacattccaccaagcaatgatgaacaaagtgctgtgatagccccggcatttataatgtatctgtaat |
75 |
Q |
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|||| |||||||||||||||||||||||||| || | |||||| |||||||| ||||||||||||||||| |||| |
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| T |
9639699 |
cctggggcaacattccaccaagcaatgatgagcataatgctgtaatagccccagcatttataatgtatctataat |
9639773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 9639780 - 9639830
Alignment:
| Q |
117 |
agaaaatggtattttaagaatatttatacacaaaatggacacattgaatac |
167 |
Q |
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| T |
9639780 |
agaaaatggtattttaggaatacttatacacaaaatagacactttcaatac |
9639830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 9615180 - 9615216
Alignment:
| Q |
117 |
agaaaatggtattttaagaatatttatacacaaaatg |
153 |
Q |
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| T |
9615180 |
agaaaatggtattttaggagtatttatacacaaaatg |
9615216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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