View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_46 (Length: 234)
Name: NF17959_low_46
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 16908743 - 16908970
Alignment:
| Q |
3 |
ttcattctcttctcaaactcactcaaaaaaccatcatcaccgtcttcggcatcttcgatttttctaacaacccaaatgaaatcatggccagaatcttcaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16908743 |
ttcattctcttctcaaactcactcaaaaaaccatcatcaccgtcttcggcatcttcgattttcctaacaacccaaatgaaatcatggccagaatcttcaa |
16908842 |
T |
|
| Q |
103 |
gtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatagagaacagaatcatctttctttgaatcaagccactt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
16908843 |
gtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacataaagaacagaatcatatttctttgaatcaagccactt |
16908942 |
T |
|
| Q |
203 |
aagcaccccttcttcttcatcttcttct |
230 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
16908943 |
aagcaccccttcttcttcatcttcttct |
16908970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 14869918 - 14869695
Alignment:
| Q |
1 |
ccttcattctcttctcaaactcactcaaaaaaccatcatcaccgtcttcggcatcttcgatttttctaacaacccaaatgaaatcatggccagaatcttc |
100 |
Q |
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|||||||||||||||||||||| | |||||| ||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
14869918 |
ccttcattctcttctcaaactccgtaaaaaaa------tcaccatcttcaacatcttcaattttcctaacaacccaaatgaaatcatggccagaatgttc |
14869825 |
T |
|
| Q |
101 |
aagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatagagaacagaatcatctttctttgaatcaagccac |
200 |
Q |
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| T |
14869824 |
aagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatgctcccaaaactaacatagagaacagaatcatctttcttagaatcaagccac |
14869725 |
T |
|
| Q |
201 |
ttaagcaccccttcttcttcatcttcttct |
230 |
Q |
| |
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|||||||| ||||| ||||||||||||||| |
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| T |
14869724 |
ttaagcactccttcatcttcatcttcttct |
14869695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 207
Target Start/End: Original strand, 14710257 - 14710396
Alignment:
| Q |
68 |
aacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatag |
167 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| || ||||||||||| | ||| |||||||| | |||| |
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| T |
14710257 |
aacaacccaaatgaaatcatggcttgaagcttcaagtgcatgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttagatag |
14710356 |
T |
|
| Q |
168 |
agaacagaatcatctttctttgaatcaagccacttaagca |
207 |
Q |
| |
|
|||||||||| |||||||| || | |||||| ||||||| |
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| T |
14710357 |
agaacagaattctctttcttagagttaagccatttaagca |
14710396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 26260450 - 26260388
Alignment:
| Q |
61 |
tttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaa |
123 |
Q |
| |
|
|||| ||||||||||||||||||| ||| || |||| ||||||| |||||||||||||||||| |
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| T |
26260450 |
ttttcctaacaacccaaatgaaattatgacctgaattttcaagtccatgagctatttcaacaa |
26260388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 26204459 - 26204405
Alignment:
| Q |
65 |
tctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttca |
119 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||| |||||||||||||| |
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|
| T |
26204459 |
tctaacaacccaaatgaaattatgaccagaattttcaagaccatgagctatttca |
26204405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 26224097 - 26224043
Alignment:
| Q |
65 |
tctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttca |
119 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||| |||||||||||||| |
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|
| T |
26224097 |
tctaacaacccaaatgaaattatgaccagaattttcaagaccatgagctatttca |
26224043 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 26227550 - 26227488
Alignment:
| Q |
61 |
tttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaa |
123 |
Q |
| |
|
|||| ||||||||||||||||||| ||| || |||| |||||| ||||||||||||| |||| |
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| T |
26227550 |
ttttcctaacaacccaaatgaaattatgacctgaattttcaagaccatgagctatttctacaa |
26227488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 17572660 - 17572779
Alignment:
| Q |
68 |
aacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatag |
167 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| || ||||||||||| | ||| |||||||| |||||| |
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| T |
17572660 |
aacaacccaaatgaaatcatggcttgaagtttcaagtgcatgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttacatag |
17572759 |
T |
|
| Q |
168 |
agaacagaatcatctttctt |
187 |
Q |
| |
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|||||||||| |||||||| |
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| T |
17572760 |
agaacagaattctctttctt |
17572779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 17620052 - 17619933
Alignment:
| Q |
68 |
aacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatag |
167 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||||||||||| ||||||| | ||||||||||| | ||| |||||||| |||||| |
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| T |
17620052 |
aacaacccaaatgaaattatggcttgaagcttcaagtgcatgagctatttcaatgagttgagatggtgggaacttgtttaagctgccaaaacttacatag |
17619953 |
T |
|
| Q |
168 |
agaacagaatcatctttctt |
187 |
Q |
| |
|
| |||||||| |||||||| |
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| T |
17619952 |
ataacagaattctctttctt |
17619933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 5995045 - 5995166
Alignment:
| Q |
61 |
tttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaact |
160 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||| |||||||||||| || |||||||| | |||| | ||| || || ||||| || |||||||| |
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|
| T |
5995045 |
tttttctaacaacccaaatgaaattatgacctgaattttcaagtgcatgtgcaatttcaactaactgagaataaggaaatttattcatactgccaaaact |
5995144 |
T |
|
| Q |
161 |
aacatagagaacagaatcatct |
182 |
Q |
| |
|
||||| | ||||||| ||||| |
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| T |
5995145 |
tacatataaaacagaaccatct |
5995166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 12613541 - 12613434
Alignment:
| Q |
97 |
cttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatagagaacagaatcatctttctttgaatcaag |
196 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||| |||||||||||||||| |||||||| |||| ||| |
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|
| T |
12613541 |
cttcaagtgcatgagctatttcaatgagttgagatgatgggaacttgttcatgctaccaaaacttacatagagaacagaattctctttcttggaattaag |
12613442 |
T |
|
| Q |
197 |
ccacttaa |
204 |
Q |
| |
|
||| |||| |
|
|
| T |
12613441 |
ccatttaa |
12613434 |
T |
|
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