View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_47 (Length: 229)
Name: NF17959_low_47
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 16308863 - 16308664
Alignment:
| Q |
16 |
caaaaatcgccttcatgtttttgactcctggttctttaccatttgagaaattgtgggataacttcttccaagtaaggattgtttgttacctatctaatct |
115 |
Q |
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| T |
16308863 |
caaaaatcgccttcatgtttttgactcctggttctttaccatttgagaaattgtgggataacttcttccaagtaaggattgtttgttacctatctaatct |
16308764 |
T |
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| Q |
116 |
attattttgaattcaatatttgaaccatgtaatgttaatttgcatgaagagagtaagaggcaacgagaagcttctgaattattaatgcttctttcttttc |
215 |
Q |
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| T |
16308763 |
attattttgaattcaatatttgaaccatgtaatgttaatttgcatgaagagagtaagaggcaacgagaagcttctgaattattaatgcttctttcttttc |
16308664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 16300437 - 16300355
Alignment:
| Q |
16 |
caaaaatcgccttcatgtttttgactcctggttctttaccatttgagaaattgtgggataacttcttccaagtaaggattgtt |
98 |
Q |
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| T |
16300437 |
caaaagtcgccttcatgtttttgactcctggttctctaccatttgaaaaattgtgggataactttttccaagtaaggattgtt |
16300355 |
T |
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