View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_5 (Length: 550)
Name: NF17959_low_5
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Complemental strand, 46737910 - 46737478
Alignment:
| Q |
16 |
ataagtataatttgttacaatagaaaaaattaaacaatggctgatatgcttcgcgggaaatagcactacccttcgaaaaattaaacagtggctgacttgg |
115 |
Q |
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| T |
46737910 |
ataagcataatttattacaatagaaaaaattaaacagtg-ctgatatgcttcgcgggaaatagcactacccttcgaaaaattaaacagtggctgacttgg |
46737812 |
T |
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| Q |
116 |
ctagtagcaatggtgaatggaatgttattattttggaaaaatgcatgctagagatataatttggagaattatggctttaacttctccgaatggtaagtgc |
215 |
Q |
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| T |
46737811 |
ctagtagcaatggtgaatggaatgttattattttggaaaaatgcatactagagatataatttggagaattatggcttcaacttctccgaatggtaagtgc |
46737712 |
T |
|
| Q |
216 |
ttgcgacctggtggaatatccggtttcctcctcatataatttgttgtgcaattttcatgatgagaatacactgatataggatggaatcggatttggaggt |
315 |
Q |
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| T |
46737711 |
ttgcgacctggtggaatatccggtttcctcctcatataatttgttgtgcaattttcatgatgagaat--actgatataggatggaatcggatttggaggt |
46737614 |
T |
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| Q |
316 |
ttggaaaatagtagatccctattgcatgcagtgtggccaattaatagagactacgttacatgtgatgagggactgcccactagctttggttgtttggttg |
415 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46737613 |
ttggaaaataggagatccctattgcatgcattgtggccaattaatagagactacgttacatgtgatgagggactgcccactagctttggttgtttggttg |
46737514 |
T |
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| Q |
416 |
aatgtggtaaagattgaatatcggctacaatttttc |
451 |
Q |
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| T |
46737513 |
aatgtggtaaagattgaatatcggctacaatttttc |
46737478 |
T |
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